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(-) Description

Title :  CRYSTAL STRUCTURE OF GLYCEROL TRINITRATE REDUCTASE NERA FROM AGROBACTERIUM RADIOBACTER IN COMPLEX WITH 4-HYDROXYBENZALDEHYDE
 
Authors :  G. Oberdorfer, K. Gruber
Date :  06 Mar 13  (Deposition) - 08 May 13  (Release) - 15 May 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.29
Chains :  Asym./Biol. Unit :  A
Keywords :  Tim-Barrel, Ene-Reductase, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. Oberdorfer, A. Binter, S. Wallner, K. Durchschein, M. Hall, K. Faber, P. Macheroux, K. Gruber
The Structure Of Glycerol Trinitrate Reductase Nera From Agrobacterium Radiobacter Reveals The Molecular Reason For Nitro- And Ene-Reductase Activity In Oye Homologues.
Chembiochem V. 14 836 2013
PubMed-ID: 23606302  |  Reference-DOI: 10.1002/CBIC.201300136

(-) Compounds

Molecule 1 - GTN REDUCTASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET21A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: NERA
    Organism Common: AGROBACTERIUM TUMEFACIENS
    Organism Scientific: AGROBACTERIUM TUMEFACIENS
    Organism Taxid: 358

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
1FMN1Ligand/IonFLAVIN MONONUCLEOTIDE
2HBA1Ligand/IonP-HYDROXYBENZALDEHYDE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREALA A:22 , PRO A:23 , LEU A:24 , THR A:25 , GLY A:55 , GLN A:97 , HIS A:178 , ASN A:181 , ARG A:230 , THR A:271 , ASN A:305 , ASN A:306 , GLY A:307 , PHE A:327 , GLY A:328 , LYS A:329 , PHE A:355 , TYR A:356 , HBA A:402 , HOH A:523 , HOH A:529 , HOH A:593BINDING SITE FOR RESIDUE FMN A 401
2AC2SOFTWARETHR A:25 , HIS A:178 , ASN A:181 , TYR A:183 , TYR A:356 , FMN A:401BINDING SITE FOR RESIDUE HBA A 402

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4JIP)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4JIP)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4JIP)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4JIP)

(-) Exons   (0, 0)

(no "Exon" information available for 4JIP)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:370
                                                                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains d4jipa_ A: automated matches                                                                                                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eee..eee...eee.......hhhhh.hhhhhhhhhh.....eeeeeeee...............hhhhhhhhhhhhhhhhhh...eeeeee......hhhhhhhhh..ee........eeeee.....eeeee....ee.hhhhhhhhhhhhhhhhhhhhhh...eeeee....hhhhhhhh............hhhhhhhhhhhhhhhhhhhhh...eeeee....hhhhh...hhhhhhhhhhhhhh.....eeeee.................hhhhhhhhhhhh....eeeee...hhhhhhhhhhh....eeeehhhhhhh.hhhhhhhh.......hhhhh................ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jip A   2 TSLFEPAQAGDIALANRIVMAPLTRNRSPGAIPNNLNATYYEQRATAGLIVTEGTPISQQGQGYADVPGLYKREAIEGWKKITDGVHSAGGKIVAQIWHVGRISHTSLQPHGGQPVAPSAITAKSKTYIINDDGTGAFAETSEPRALTIDDIGLILEDYRSGARAALEAGFDGVEIHAANGYLIEQFLKSSTNQRTDDYGGSIENRARFLLEVVDAVAEEIGAGRTGIRLSPVTPANDIFEADPQPLYNYVVEQLGKRNLAFIHVVEGATGGPRDFKQGDKPFDYASFKAAYRNAGGKGLWIANNGYDRQSAIEAVESGKVDAVAFGKAFIANPDLVRRLKNDAPLNAPNQPTFYGGGAEGYTDYPALAQ 371
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4JIP)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4JIP)

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        O31246_RHIRD | O31246: 5n6g
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        O31246_RHIRD | O31246: 4jic 4jiq

(-) Related Entries Specified in the PDB File

4jic CRYSTAL STRUCTURE OF GLYCEROL TRINITRATE REDUCTASE NERA FROM AGROBACTERIUM RADIOBACTER
4jiq