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(-) Description

Title :  STRUCTURE OF HUMAN MYOSIN 7A C-TERMINAL MYTH4-FERM DOMAIN IN COMPLEX WITH HARMONIN-A PDZ3 DOMAIN
 
Authors :  I. Yu, Y. Sourigues, M. A. Titus, A. Houdusse
Date :  16 Jan 17  (Deposition) - 05 Jul 17  (Release) - 12 Jul 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Motor Protein, Myosin, Myosin Tail, Harmonin, Pdz (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  I. M. Yu, V. J. Planelles-Herrero, Y. Sourigues, D. Moussaoui, H. Sirkia, C. Kikuti, D. Stroebel, M. A. Titus, A. Houdusse
Myosin 7 And Its Adaptors Link Cadherins To Actin.
Nat Commun V. 8 15864 2017
PubMed-ID: 28660889  |  Reference-DOI: 10.1038/NCOMMS15864

(-) Compounds

Molecule 1 - UNCONVENTIONAL MYOSIN-VIIA
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: MYO7A, USH1B
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
 
Molecule 2 - CDNA FLJ51329, HIGHLY SIMILAR TO HARMONIN
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPHE A:1908 , ASP A:1910 , THR A:1912 , GLU A:1914 , LEU A:1936binding site for residue ACT A 2301
2AC2SOFTWARETYR A:2136binding site for residue ACT A 2302

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5MV9)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5MV9)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5MV9)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5MV9)

(-) Exons   (0, 0)

(no "Exon" information available for 5MV9)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:480
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .......hhhhhhhhh..........................hhhhh.hhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh.......hhhhhhhhhhh.....hhhhhhhhhhhhhhhh......hhhhhhhhhh....eeeeeee...eeeeeee....hhhhhhhhhhhhh.......eeeeeee...eee.....hhhhhhhhhhhhhhhh....eeeeeee..........hhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh.......eeeeeee........eeeeeee..eeeee......eeeeehhh.eeeeee...eeeeee...eeeee..hhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                5mv9 A 1707 VRAKPYTLEEFSYDYFRPPPKHTLSRVDRLWSHTREPLKQALLKKLLGSEELSQEACLAFIAVLKYMGDYPSKRTRSVNELTDQIFEGPLKAEPLKDEAYVQILKQLTDNHIRYSEERGWELLWLCTGLFPPSNILLPHVQRFLQSRKHCPLAIDCLQRLQKALRNGSRKYPPHLVEVEAIQHKTTQIFHKVYFPDDTDEAFEVESSTKAKDFCQNIATRLLLKSSEGFSLFVKIADKVLSVPENDFFFDFVRHLTDWIKKARSLTYQVFFMKKLWTTTVPGKDPMADSIFHYYQELPKYLRGYHKCTREEVLQLGALIYRVKFEEDKSYFPSIPKLLRELVPQDLIRQVSPDDWKRSIVAYFNKHAGKSKEEAKLAFLKLIFKWPTFGSAFFEVKQTTEPNFPEILLIAINKYGVSLIDPKTKDILTTHPFTKISNWSSGNTYFHITIGNSKLLCETSLGYKMDDLLTSYISQMLTAMS 2206
                                  1716      1726      1744      1754      1764      1774      1784      1794      1804      1814      1824      1834      1844      1854      1864      1874      1884      1894      1904      1914      1924      1934      1944      1954      1964      1974  ||  1992      2002      2012      2022      2032      2042      2052      2062      2072      2082      2092      2102      2112      2122      2132      2142      2152      2162      2172||    2186      2196      2206
                                                   1733|                                                                                                                                                                                                                                       1977|                                                                                                                                                                                       2173|                            
                                                    1742                                                                                                                                                                                                                                        1986                                                                                                                                                                                        2178                            


Chain B from PDB  Type:PROTEIN  Length:120
                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....................eeeeee.......eeeeee......eeeeeee....hhhhhh......eeeee..ee....hhhhhhhhhhhhhhh....eeeeee.............. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------ Transcript
                5mv9 B  433 YEEGFDPYSMFTPEQIMGKDVRLLRIKKEGSLDLALEGGVDSPIGKVVVSAVYERGAAERHGGIVKGDEIMAINGKIVTDYTLAEADAALQKAWNQGGDWIDLVVAVCPPKEYDDELTFF  552
                                   442       452       462       472       482       492       502       512       522       532       542       552
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5MV9)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5MV9)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5MV9)

(-) Gene Ontology  (53, 55)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

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        B4DV53_HUMAN | B4DV53: 5mv8

(-) Related Entries Specified in the PDB File

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