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(-) Description

Title :  STRUCTURE OF HUMAN MYOSIN 7B C-TERMINAL MYTH4-FERM DOMAIN IN COMPLEX WITH HARMONIN-A PDZ3 DOMAIN
 
Authors :  I. Yu, Y. Sourigues, M. A. Titus, A. Houdusse
Date :  16 Jan 17  (Deposition) - 05 Jul 17  (Release) - 12 Jul 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.88
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Myosin, Motor Protein, Harmonin, Myosin Tail, Pdz (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  I. M. Yu, V. J. Planelles-Herrero, Y. Sourigues, D. Moussaoui, H. Sirkia, C. Kikuti, D. Stroebel, M. A. Titus, A. Houdusse
Myosin 7 And Its Adaptors Link Cadherins To Actin.
Nat Commun V. 8 15864 2017
PubMed-ID: 28660889  |  Reference-DOI: 10.1038/NCOMMS15864

(-) Compounds

Molecule 1 - UNCONVENTIONAL MYOSIN-VIIB
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: MYO7B
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
 
Molecule 2 - CDNA FLJ51329, HIGHLY SIMILAR TO HARMONIN
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 7)

Asymmetric/Biological Unit (2, 7)
No.NameCountTypeFull Name
1GOL6Ligand/IonGLYCEROL
2MG1Ligand/IonMAGNESIUM ION

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:1984 , LYS A:1986 , ASP A:1987 , LYS A:1988binding site for residue GOL A 2201
2AC2SOFTWAREARG A:1758 , GLY A:1760 , LYS A:1761 , HOH A:2338binding site for residue GOL A 2202
3AC3SOFTWARESER A:1836 , TRP A:1837 , GLU A:1838binding site for residue GOL A 2203
4AC4SOFTWAREPRO A:2020 , TYR A:2022 , PRO A:2023 , ASP A:2024binding site for residue GOL A 2204
5AC5SOFTWAREASN A:1964 , LYS A:2041 , HOH A:2405binding site for residue GOL A 2205
6AC6SOFTWAREHOH A:2361 , HOH A:2423binding site for residue MG A 2206
7AC7SOFTWAREVAL A:1850 , TYR A:1889 , MET A:1891 , THR B:550 , HOH B:705binding site for residue GOL B 601

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5MV8)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5MV8)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5MV8)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5MV8)

(-) Exons   (0, 0)

(no "Exon" information available for 5MV8)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:479
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................hhhhhhhhh...................hhhhhh..hhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhh..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhh.......hhhhhhhhhhh.....hhhhhhhhhhhhhhhh......hhhhhhhhhh....eeeeeee...eeeeeee....hhhhhhhhhhhhhh......eeeeeee..eeee.....hhhhhhhhhhhhhhhhh.....eeeeeee..........hhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh...........hhhhh....hhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh.......eeeeeee........eeeeeee..eeeee......eeeee......eeee...eeeee...eeee..hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5mv8 A    0 HHHHHHSSHHKEKLHTLEEFSYEFFRAPEGHLWAYSCEPLRQPLLKRVHADVDLWNIACEIFVAILRYMGDYPSRQAWPTLELTDQIFTLALQHPALQDEVYCQILKQLTHNSNRHSEERGWQLLWLCTGLFPPSKGLLPHAQKFIDTRRGKLLAPDCSRRIQKVLRTGPRKQPPHEVEVEAAEQNVSRICHKIYFPNDTSEMLEVVANTRVRDVCDSIATRLQLASWEGCSLFIKISDKVISQKEGDFFFDSLREVSDWVKKNKPVTLPYQVYFMRKLWLNISPGKDVNADTILHYHQELPKYLRGFHKCSREDAIHLAGLIYKAQFNNDRSQLASVPKILRELVPENLTRLMSSEEWKKSILLAYDKHKDKTVEEAKVAFLKWICRWPTFGSAFFEVKQTSEPSYPDVILIAINRHGVLLIHPKTKDLLTTYPFTKISSWSSGSTYFHMALSRLLCETSLGYKMDDLLTSYVQQLLS 2100
                                     9|     1614      1639      1649      1659      1669      1679      1689      1699      1709      1719      1729      1739      1749      1759      1769      1779      1789      1799      1809      1819      1829      1839      1849      1859      1869     |1885      1895      1905      1915      1925      1935      1945      1955      1965      1975      1985      1995      2005      2015      2025      2035      2045      2055      2065  ||  2081      2091         
                                     9|              1623|                                                                                                                                                                                                                                        1875|                                                                                                                                                                                      2068|                         
                                   1605               1639                                                                                                                                                                                                                                         1882                                                                                                                                                                                       2075                         


Chain B from PDB  Type:PROTEIN  Length:120
                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....hhhhh.hhhhhh...eeeeeee......eeeee........eeeeee................eeeee..ee....hhhhhhhhhhhhhhh...eeeeeee.............. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------ Transcript
                5mv8 B  433 YEEGFDPYSMFTPEQIMGKDVRLLRIKKEGSLDLALEGGVDSPIGKVVVSAVYERGAAERHGGIVKGDEIMAINGKIVTDYTLAEADAALQKAWNQGGDWIDLVVAVCPPKEYDDELTFF  552
                                   442       452       462       472       482       492       502       512       522       532       542       552
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5MV8)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5MV8)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5MV8)

(-) Gene Ontology  (17, 17)

Asymmetric/Biological Unit(hide GO term definitions)

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  5mv8
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  MYO7B_HUMAN | Q6PIF6
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        B4DV53_HUMAN | B4DV53: 5mv9
        MYO7B_HUMAN | Q6PIF6: 5mv7 5xbf

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5MV8)