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(-) Description

Title :  THE STUDY OF THE X-RAY INDUCED ENZYMATIC REDUCTION OF MOLECULAR OXYGEN TO WATER FOR LACCASE FROM STECCHERINUM MURASHKINSKYI.THE 12-TH STRUCTURE OF THE SERIES WITH TOTAL EXPOSITION TIME 333 MIN.
 
Authors :  K. M. Polyakov, S. Gavryushov, T. V. Fedorova, O. A. Glazunova, A. N. Pop
Date :  28 Nov 16  (Deposition) - 10 May 17  (Release) - 24 May 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.35
Chains :  Asym./Biol. Unit :  A
Keywords :  Multi Copper Oxidase, Laccase, Complex With Molecular Oxygen, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. M. Polyakov, S. Gavryushov, S. Ivanova, T. V. Fedorova, O. A. Glazunova, A. N. Popov, O. V. Koroleva
Structural Study Of The X-Ray-Induced Enzymatic Reduction O Molecular Oxygen To Water By Steccherinum Murashkinskyi Laccase: Insights Into The Reaction Mechanism.
Acta Crystallogr D Struct V. 73 388 2017 Biol
PubMed-ID: 28471364  |  Reference-DOI: 10.1107/S2059798317003667

(-) Compounds

Molecule 1 - LACCASE 2
    Chains: A
    EC Number: 1.10.3.2
    Organism Scientific: STECCHERINUM MURASHKINSKYI
    Organism Taxid: 627145

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 12)

Asymmetric/Biological Unit (5, 12)
No.NameCountTypeFull Name
1CIT1Ligand/IonCITRIC ACID
2CU4Ligand/IonCOPPER (II) ION
3NA1Ligand/IonSODIUM ION
4NAG4Ligand/IonN-ACETYL-D-GLUCOSAMINE
5OXY2Ligand/IonOXYGEN MOLECULE

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:112 , HIS A:402 , HIS A:452 , OXY A:609 , HOH A:701 , HOH A:704 , HOH A:705binding site for residue CU A 601
02AC2SOFTWAREHIS A:65 , HIS A:67 , HIS A:110 , HIS A:454 , OXY A:609 , HOH A:701 , HOH A:704 , HOH A:705binding site for residue CU A 602
03AC3SOFTWAREHIS A:65 , HIS A:67 , HIS A:400 , HIS A:402 , OXY A:609 , HOH A:705 , HOH A:1029 , HOH A:1099binding site for residue CU A 603
04AC4SOFTWAREHIS A:397 , CYS A:453 , ILE A:455 , HIS A:458binding site for residue CU A 604
05AC5SOFTWAREHIS A:65 , HIS A:110 , HIS A:112 , HIS A:400 , HIS A:402 , HIS A:452 , HIS A:454 , CU A:601 , CU A:602 , CU A:603 , OXY A:610 , HOH A:701 , HOH A:702 , HOH A:704 , HOH A:705binding site for residue OXY A 609
06AC6SOFTWAREHIS A:110 , SER A:111 , HIS A:112 , TYR A:117 , ASP A:456 , OXY A:609 , HOH A:702 , HOH A:703 , HOH A:914binding site for residue OXY A 610
07AC7SOFTWARETHR A:293 , THR A:294 , THR A:295 , GLY A:431 , GLY A:432 , HOH A:726 , HOH A:840 , HOH A:881 , HOH A:950 , HOH A:1015binding site for residue CIT A 611
08AC8SOFTWAREVAL A:317 , HOH A:939 , HOH A:1175 , HOH A:1177 , HOH A:1196 , HOH A:1215binding site for residue NA A 612
09AC9SOFTWARETHR A:307 , ASN A:414 , PRO A:417 , ASN A:418 , HOH A:755 , HOH A:804 , HOH A:827 , HOH A:833 , HOH A:862 , HOH A:863 , HOH A:889 , HOH A:907 , HOH A:1047 , HOH A:1053 , HOH A:1159 , HOH A:1206binding site for Poly-Saccharide residues NAG A 607 through NAG A 608 bound to ASN A 414
10AD1SOFTWAREARG A:323 , VAL A:331 , GLU A:385 , ASN A:436 , HOH A:711 , HOH A:808 , HOH A:832 , HOH A:981 , HOH A:1007 , HOH A:1140 , HOH A:1181binding site for Poly-Saccharide residues NAG A 605 through NAG A 606 bound to ASN A 436

(-) SS Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1A:86 -A:488
2A:118 -A:208

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Gly A:4 -Pro A:5
2Phe A:32 -Pro A:33
3Leu A:370 -Pro A:371
4Gly A:395 -Pro A:396

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5MIB)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5MIB)

(-) Exons   (0, 0)

(no "Exon" information available for 5MIB)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:499
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeeeee......eeeeee........eeee...eeeeeeee...hhhhh....eeee......hhhhh..............eeeeeee.....eeeeeee...hhhhhh.eeeeeee.....hhhhh...hhh.eeeeeee...hhhhh.........eeee................eeee....eeeeeeee......eeeee....eeeeee..eeeeeeee..eee....eeeeeee......eeeeeeee......hhhhh.eeeeee....................hhhhh..................eeee..eeee..eeee..........hhhhhhhh...hhhhh.....eeee....eeeee..........eeee....eeeee.............ee.eee........eeeee....eeeeeee.hhhhhhh..eeeeee...hhhhhh..hhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5mib A   1 AQIGPVTDLHITNANISPDGFSRPAVLAGGTFPGPTIAGNTGDNFQITVFNDLTDPSMLTDTSIHWHGLFQKGTNWADGPAFVTQCPIITGQSFDYNFNVPGQAGTFWYHSHLSTQYCDGLRGPFVVYDPNDPNASLYDVDDDTTIITLADWYHTLAQQEPIGAAITADATLINGLGRSFTNTTASPLSVITVQSGKRYRMRLVSISCDPNYLFSIDGHDMTIIEVDGVNSQQLTVDQIQIFAAQRYSFVLNANQPVGNYWIRAQPNSGGQGFDGGINSAILRYEGATVEDPTTTAPTTFSNPLVETDLHPLADLGVPGQPFRGGADDPLVLNLAFANGRFSIDGVSFVPPTVPVLLQILSGAQNAQDLLPAGSVISLPSNSVIEVALPAGAAGGPHPFHLHGHNFAVVQSANNATPNYVNPIWRDTVSIGGTGDNVTIRFTTNNPGPWFLHCHIDWHLEAGFAIVFAEDIPDTASANPVPQAWSDLCPAYDQAHNIST 499
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5MIB)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5MIB)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5MIB)

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Gly A:395 - Pro A:396   [ RasMol ]  
    Gly A:4 - Pro A:5   [ RasMol ]  
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        I1VE66_9APHY | I1VE66: 5mej 5mew 5mhu 5mhv 5mhw 5mhx 5mhy 5mhz 5mi1 5mi2 5mia 5mic 5mid 5mie 5mig
UniProtKB/TrEMBL
        I1VE66_9APHY | I1VE66: 5e9n

(-) Related Entries Specified in the PDB File

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