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(-) Description

Title :  CRYSTAL STRUCTURE OF HUMAN SND1 EXTENDED TUDOR DOMAIN IN COMPLEX WITH A SYMMETRICALLY DIMETHYLATED E2F PEPTIDE
 
Authors :  C. Tallant, P. Savitsky, J. Moehlenbrink, C. Chan, G. Nunez-Alonso, P. F. J. Sorrell, F. Von Delft, C. H. Arrowsmith, A. M. Edwards, C. Bountr O. Fedorov, N. B. La Thangue, S. Knapp, Structural Genomics Consor (Sgc)
Date :  01 Nov 16  (Deposition) - 07 Dec 16  (Release) - 14 Dec 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.45
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Transcriptional Coactivator, Structural Genomics, Structural Genomics Consortium, Sgc, Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Tallant, P. Savitsky, J. Moehlenbrink, C. Chan, G. Nunez-Alonso, P. Siejka, F. J. Sorrell, F. Von Delft, C. H. Arrowsmith, A. M. Edwards C. Bountra, O. Fedorov, N. B. La Thangue, S. Knapp
Crystal Structure Of Human Snd1 Extended Tudor Domain In Complex With A Symmetrically Dimethylated E2F Peptide
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - STAPHYLOCOCCAL NUCLEASE DOMAIN-CONTAINING PROTEIN 1
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: SND1, TDRD11
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: 100 KDA COACTIVATOR,EBNA2 COACTIVATOR P100,TUDOR DOMAIN- CONTAINING PROTEIN 11,P100 CO-ACTIVATOR
 
Molecule 2 - E2F PEPTIDE
    Chains: B
    Engineered: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
12MR2Mod. Amino AcidN3, N4-DIMETHYLARGININE

(-) Sites  (0, 0)

(no "Site" information available for 5M9O)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5M9O)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
12mr B:111 -Gly B:112

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5M9O)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5M9O)

(-) Exons   (0, 0)

(no "Exon" information available for 5M9O)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:216
                                                                                                                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeeee....eeeeee..hhhhhhhhhhhhhhhhhhh.............eeeee.....eeeeeeeeeee..eeeeee.....eeeehhh.eee.hhhhh........eeeee..ee...hhhhhhhhhhhhhhhhh.eeeeeeeee......eeeeee.....hhhhhhhhh...ee....hhhhhhhhhhhhhhhhhhhhh.hhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5m9o A 681 SYKPVFVTEITDDLHFYVQDVETGTQLEKLMENMRNDIASHPPVEGSYAPRRGEFCIAKFVDGEWYRARVEKVESPAKIHVFYIDYGNREVLPSTRLGTLSPAFSTRVLPAQATEYAFAFIQVPQDDDARTDAVDSVVRDIQNTQCLLNVEHLSAGCPHVTLQFADSKGDVGLGLVKEGLVMVEVRKEKQFQKVITEYLNAQESAKSARLNLWRYG 896
                                   690       700       710       720       730       740       750       760       770       780       790       800       810       820       830       840       850       860       870       880       890      


Chain B from PDB  Type:PROTEIN  Length:4
                                    
               SCOP domains ---- SCOP domains
               CATH domains ---- CATH domains
               Pfam domains ---- Pfam domains
         Sec.struct. author .... Sec.struct. author
                 SAPs(SNPs) ---- SAPs(SNPs)
                    PROSITE ---- PROSITE
                 Transcript ---- Transcript
                 5m9o B 111 xGxH 114
                            | | 
                          111-2MR
                            113-2MR
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5M9O)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5M9O)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5M9O)

(-) Gene Ontology  (57, 63)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    2mr B:111 - Gly B:112   [ RasMol ]  
 

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  SND1_HUMAN | Q7KZF4
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        E2F1_HUMAN | Q01094: 1h24 1o9k 2aze 5m9n
        SND1_HUMAN | Q7KZF4: 2e6n 2hqe 2hqx 2o4x 3bdl 3omc 3omg 4qmg

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5M9O)