Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
(-)Biological Unit 3
(-)Biological Unit 4
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)
Image Biological Unit 3
Biological Unit 3  (Jmol Viewer)
Image Biological Unit 4
Biological Unit 4  (Jmol Viewer)

(-) Description

Title :  CRYSTAL STRUCTURE OF HUMAN TYROSINASE RELATED PROTEIN 1 IN COMPLEX WITH KOJIC ACID
 
Authors :  X. Lai, M. Soler-Lopez, H. J. Wichers, B. W. Dijkstra
Date :  29 Oct 16  (Deposition) - 12 Jul 17  (Release) - 12 Jul 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.65
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Keywords :  Human Tyrosinase Related Protein 1, Melanin Biosynthesis, Tyrosinase, Oxidoreductase, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  X. Lai, H. J. Wichers, M. Soler-Lopez, B. W. Dijkstra
Structure Of Human Tyrosinase Related Protein 1 Reveals A Binuclear Zinc Active Site Important For Melanogenesis.
Angew. Chem. Int. Ed. Engl. 2017
PubMed-ID: 28661582  |  Reference-DOI: 10.1002/ANIE.201704616

(-) Compounds

Molecule 1 - 5,6-DIHYDROXYINDOLE-2-CARBOXYLIC ACID OXIDASE
    Chains: A, B, C, D
    EC Number: 1.14.18.-
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Common: FALL ARMYWORM
    Expression System Taxid: 7108
    Gene: TYRP1, CAS2, TYRP, TYRRP
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: DHICA OXIDASE,CATALASE B,GLYCOPROTEIN 75,MELANOMA ANTIGEN GP75,TYROSINASE-RELATED PROTEIN 1,TRP1

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A   
Biological Unit 2 (1x):  B  
Biological Unit 3 (1x):   C 
Biological Unit 4 (1x):    D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 66)

Asymmetric Unit (5, 66)
No.NameCountTypeFull Name
1FUC8Ligand/IonALPHA-L-FUCOSE
2KOJ4Ligand/Ion5-HYDROXY-2-(HYDROXYMETHYL)-4H-PYRAN-4-ONE
3MAN7Ligand/IonALPHA-D-MANNOSE
4NAG38Ligand/IonN-ACETYL-D-GLUCOSAMINE
5ZN9Ligand/IonZINC ION
Biological Unit 1 (3, 12)
No.NameCountTypeFull Name
1FUC2Ligand/IonALPHA-L-FUCOSE
2KOJ1Ligand/Ion5-HYDROXY-2-(HYDROXYMETHYL)-4H-PYRAN-4-ONE
3MAN-1Ligand/IonALPHA-D-MANNOSE
4NAG9Ligand/IonN-ACETYL-D-GLUCOSAMINE
5ZN-1Ligand/IonZINC ION
Biological Unit 2 (4, 14)
No.NameCountTypeFull Name
1FUC2Ligand/IonALPHA-L-FUCOSE
2KOJ1Ligand/Ion5-HYDROXY-2-(HYDROXYMETHYL)-4H-PYRAN-4-ONE
3MAN2Ligand/IonALPHA-D-MANNOSE
4NAG9Ligand/IonN-ACETYL-D-GLUCOSAMINE
5ZN-1Ligand/IonZINC ION
Biological Unit 3 (4, 18)
No.NameCountTypeFull Name
1FUC2Ligand/IonALPHA-L-FUCOSE
2KOJ1Ligand/Ion5-HYDROXY-2-(HYDROXYMETHYL)-4H-PYRAN-4-ONE
3MAN5Ligand/IonALPHA-D-MANNOSE
4NAG10Ligand/IonN-ACETYL-D-GLUCOSAMINE
5ZN-1Ligand/IonZINC ION
Biological Unit 4 (3, 13)
No.NameCountTypeFull Name
1FUC2Ligand/IonALPHA-L-FUCOSE
2KOJ1Ligand/Ion5-HYDROXY-2-(HYDROXYMETHYL)-4H-PYRAN-4-ONE
3MAN-1Ligand/IonALPHA-D-MANNOSE
4NAG10Ligand/IonN-ACETYL-D-GLUCOSAMINE
5ZN-1Ligand/IonZINC ION

(-) Sites  (34, 34)

Asymmetric Unit (34, 34)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:192 , HIS A:215 , HIS A:224 , ZN A:513 , KOJ A:514 , HOH A:601binding site for residue ZN A 512
02AC2SOFTWAREHIS A:377 , HIS A:381 , HIS A:404 , ZN A:512 , KOJ A:514 , HOH A:601binding site for residue ZN A 513
03AC3SOFTWAREHIS A:192 , HIS A:215 , HIS A:377 , ASN A:378 , HIS A:381 , GLY A:389 , THR A:391 , SER A:394 , ZN A:512 , ZN A:513 , HOH A:601binding site for residue KOJ A 514
04AC4SOFTWAREGLU A:66 , HIS A:100 , ARG B:64 , GLU B:66 , HIS B:100binding site for residue ZN A 515
05AC5SOFTWAREHIS B:192 , HIS B:215 , HIS B:224 , ZN B:515 , KOJ B:516 , HOH B:601binding site for residue ZN B 514
06AC6SOFTWAREHIS B:377 , HIS B:381 , HIS B:404 , ZN B:514 , KOJ B:516 , HOH B:601binding site for residue ZN B 515
07AC7SOFTWAREHIS B:192 , HIS B:215 , HIS B:377 , ASN B:378 , HIS B:381 , GLY B:389 , THR B:391 , SER B:394 , ZN B:514 , ZN B:515 , HOH B:601binding site for residue KOJ B 516
08AC8SOFTWAREHIS C:192 , HIS C:215 , HIS C:224 , KOJ C:520 , HOH C:603binding site for residue ZN C 518
09AC9SOFTWAREHIS C:377 , HIS C:381 , HIS C:404 , KOJ C:520 , HOH C:603binding site for residue ZN C 519
10AD1SOFTWAREHIS C:192 , HIS C:215 , HIS C:377 , ASN C:378 , GLY C:389 , THR C:391 , SER C:394 , ZN C:518 , ZN C:519 , HOH C:603binding site for residue KOJ C 520
11AD2SOFTWAREHIS D:192 , HIS D:215 , HIS D:224 , ZN D:514 , KOJ D:515 , HOH D:601binding site for residue ZN D 513
12AD3SOFTWAREHIS D:377 , HIS D:381 , HIS D:404 , ZN D:513 , KOJ D:515 , HOH D:601binding site for residue ZN D 514
13AD4SOFTWAREHIS D:192 , HIS D:215 , HIS D:377 , ASN D:378 , HIS D:381 , GLY D:389 , THR D:391 , SER D:394 , ZN D:513 , ZN D:514 , HOH D:601binding site for residue KOJ D 515
14AD5SOFTWAREARG A:37 , SER A:38 , ARG A:93 , PHE A:94 , ASN A:96binding site for Poly-Saccharide residues NAG A 501 through FUC A 503 bound to ASN A 96
15AD6SOFTWAREASN A:181binding site for Poly-Saccharide residues NAG A 504 through FUC A 505 bound to ASN A 181
16AD7SOFTWAREARG A:164 , SER A:292 , ASP A:295 , LEU A:299 , ASN A:304 , HOH A:602binding site for Poly-Saccharide residues NAG A 506 through NAG A 507 bound to ASN A 304
17AD8SOFTWAREASN A:350binding site for Poly-Saccharide residues NAG A 508 through NAG A 509 bound to ASN A 350
18AD9SOFTWAREGLY A:317 , ASN A:318 , VAL A:319 , ASN A:385 , GLY A:386binding site for Poly-Saccharide residues NAG A 510 through NAG A 511 bound to ASN A 385
19AE1SOFTWAREARG B:37 , SER B:38 , ARG B:93 , PHE B:94 , ASN B:96binding site for Poly-Saccharide residues NAG B 501 through FUC B 503 bound to ASN B 96
20AE2SOFTWAREARG B:28 , PHE B:179 , ASN B:181binding site for Poly-Saccharide residues NAG B 504 through FUC B 505 bound to ASN B 181
21AE3SOFTWAREARG B:164 , SER B:292 , ASP B:295 , ASN B:304binding site for Poly-Saccharide residues NAG B 506 through NAG B 507 bound to ASN B 304
22AE4SOFTWARESER A:46 , GLY A:111 , ARG A:118 , GLY A:119 , ALA A:120 , GLN A:124 , VAL A:126 , GLN B:78 , ASN B:350binding site for Poly-Saccharide residues NAG B 508 through MAN B 511 bound to ASN B 350
23AE5SOFTWAREGLY B:317 , ASN B:318 , VAL B:319 , ALA B:320 , ASN B:385 , GLY B:386binding site for Poly-Saccharide residues NAG B 512 through NAG B 513 bound to ASN B 385
24AE6SOFTWAREARG C:37 , SER C:38 , ARG C:93 , PHE C:94 , ASN C:96 , HOH C:605binding site for Poly-Saccharide residues NAG C 501 through FUC C 503 bound to ASN C 96
25AE7SOFTWAREGLU A:428 , ASN A:429 , ARG C:28 , PHE C:179 , ASN C:181 , ASP D:421 , SER D:423 , ARG D:436binding site for Poly-Saccharide residues NAG C 504 through FUC C 508 bound to ASN C 181
26AE8SOFTWAREARG C:164 , SER C:292 , ASP C:295 , ASN C:304 , HOH C:601 , HOH C:604binding site for Poly-Saccharide residues NAG C 509 through NAG C 510 bound to ASN C 304
27AE9SOFTWAREASN C:350 , LEU D:45 , SER D:46 , SER D:60 , ARG D:62 , ASN D:109 , GLY D:111 , CYS D:113 , ARG D:118 , GLY D:119 , GLN D:124binding site for Poly-Saccharide residues NAG C 511 through MAN C 515 bound to ASN C 350
28AF1SOFTWAREASN C:318 , VAL C:319 , ALA C:320 , ASN C:385 , GLY C:386binding site for Poly-Saccharide residues NAG C 516 through NAG C 517 bound to ASN C 385
29AF2SOFTWAREARG D:37 , SER D:38 , ASP D:86 , PRO D:91 , LEU D:92 , PHE D:94 , ASN D:96 , SER D:166binding site for Poly-Saccharide residues ARG D 93 through FUC D 503 bound to ASN D 96
30AF3SOFTWAREASP A:421 , ASN D:104 , TRP D:117binding site for Mono-Saccharide NAG D 504 bound to ASN D 104
31AF4SOFTWAREPHE D:179 , ASN D:181binding site for Poly-Saccharide residues NAG D 505 through FUC D 506 bound to ASN D 181
32AF5SOFTWAREARG D:164 , SER D:292 , ASP D:295 , ASN D:304binding site for Poly-Saccharide residues NAG D 507 through NAG D 508 bound to ASN D 304
33AF6SOFTWAREASN D:350binding site for Poly-Saccharide residues NAG D 509 through NAG D 510 bound to ASN D 350
34AF7SOFTWAREGLY D:317 , ASN D:318 , VAL D:319 , ALA D:320 , ASN D:385 , GLY D:386binding site for Poly-Saccharide residues NAG D 511 through NAG D 512 bound to ASN D 385

(-) SS Bonds  (28, 28)

Asymmetric Unit
No.Residues
1A:30 -A:41
2A:42 -A:65
3A:56 -A:99
4A:101 -A:110
5A:113 -A:122
6A:258 -A:261
7A:290 -A:303
8B:30 -B:41
9B:42 -B:65
10B:56 -B:99
11B:101 -B:110
12B:113 -B:122
13B:258 -B:261
14B:290 -B:303
15C:30 -C:41
16C:42 -C:65
17C:56 -C:99
18C:101 -C:110
19C:113 -C:122
20C:258 -C:261
21C:290 -C:303
22D:30 -D:41
23D:42 -D:65
24D:56 -D:99
25D:101 -D:110
26D:113 -D:122
27D:258 -D:261
28D:290 -D:303

(-) Cis Peptide Bonds  (16, 16)

Asymmetric Unit
No.Residues
1Trp A:90 -Pro A:91
2Pro A:345 -Pro A:346
3Val A:441 -Pro A:442
4Trp A:444 -Pro A:445
5Trp B:90 -Pro B:91
6Pro B:345 -Pro B:346
7Val B:441 -Pro B:442
8Trp B:444 -Pro B:445
9Trp C:90 -Pro C:91
10Pro C:345 -Pro C:346
11Val C:441 -Pro C:442
12Trp C:444 -Pro C:445
13Trp D:90 -Pro D:91
14Pro D:345 -Pro D:346
15Val D:441 -Pro D:442
16Trp D:444 -Pro D:445

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5M8M)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5M8M)

(-) Exons   (0, 0)

(no "Exon" information available for 5M8M)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:446
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee....hhhhhhhhee............hhhhhhhh.eeeee.............................eeeee...ee.....ee...ee.....ee..eee.hhhhhhhhhhhhhhhhhhhhhhh....eeee..hhhhh.........ee..hhhhhhhhhhhhh.......................hhhhhhhhhhhhhhhhhhhhhh........................................hhhhhh.....hhhhhhhhh....................hhhhhh..hhhhhhhhh................hhhhhhh..............hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhh......................hhhhhh.hhhhhh.eee...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5m8m A  25 QFPRQCATVEALRSGMCCPDLSPVSGPGTDRCGSSSGRGRCEAVTADSRPHSPQYPHDGRDDREVWPLRFFNRTCHCNGNFSGHNCGTCRPGWRGAACDQRVLIVRRNLLDLSKEEKNHFVRALDMAKRTTHPLFVIATRRSEEILGPDGNTPQFENISIYNYFVWTHYYSVKKTFLGVGQESFGEVDFSHEGPAFLTWHRYHLLRLEKDMQEMLQEPSFSLPYWNFATGKNVCDICTDDLMGSRSNFDSTLISPNSVFSQWRVVCDSLEDYDTLGTLCNSTEDGPIRRNPAGNVARPMVQRLPEPQDVAQCLEVGLFDTPPFYSNSTNSFRNTVEGYSDPTGKYDPAVRSLHNLAHLFLNGTGGQTHLSPNDPIFVLLHTFTDAVFDEWLRRYNADISTFPLENAPIGHNRQYNMVPFWPPVTNTEMFVTAPDNLGYTYEIQWPS 470
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464      


Chain B from PDB  Type:PROTEIN  Length:446
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee.hhhhhhhhhhh..............hhhhh....eeeee.............................eeeee...ee.....ee...ee.....ee..eee.hhhhhhhhhhhhhhhhhhhhhhh....eeee..hhhhh.........ee..hhhhhhhhhhhhhhh....................hhhhhhhhhhhhhhhhhhhhhhh........................................hhhhhh.....hhhhhhhhh....................hhhhh...hhhhhhhhh................hhhhhhhh.............hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhh......................hhhhhh.hhhhhhheee...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5m8m B  25 QFPRQCATVEALRSGMCCPDLSPVSGPGTDRCGSSSGRGRCEAVTADSRPHSPQYPHDGRDDREVWPLRFFNRTCHCNGNFSGHNCGTCRPGWRGAACDQRVLIVRRNLLDLSKEEKNHFVRALDMAKRTTHPLFVIATRRSEEILGPDGNTPQFENISIYNYFVWTHYYSVKKTFLGVGQESFGEVDFSHEGPAFLTWHRYHLLRLEKDMQEMLQEPSFSLPYWNFATGKNVCDICTDDLMGSRSNFDSTLISPNSVFSQWRVVCDSLEDYDTLGTLCNSTEDGPIRRNPAGNVARPMVQRLPEPQDVAQCLEVGLFDTPPFYSNSTNSFRNTVEGYSDPTGKYDPAVRSLHNLAHLFLNGTGGQTHLSPNDPIFVLLHTFTDAVFDEWLRRYNADISTFPLENAPIGHNRQYNMVPFWPPVTNTEMFVTAPDNLGYTYEIQWPS 470
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464      


Chain C from PDB  Type:PROTEIN  Length:446
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee.hhhhhhhhhhhee............hhhhh....eeeee.............................eeeee...ee.....ee...ee.....ee..eee.hhhhhhhhhhhhhhhhhhhhhhh....eeee..hhhhh.........ee..hhhhhhhhhhhhhhh....................hhhhhhhhhhhhhhhhhhhhhhh........................................hhhhh......hhhhhhhhh....................hhhhhh..hhhhhhhhh................hhhhhhh..............hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh.............................hhhhhh.hhhhhh.eee...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5m8m C  25 QFPRQCATVEALRSGMCCPDLSPVSGPGTDRCGSSSGRGRCEAVTADSRPHSPQYPHDGRDDREVWPLRFFNRTCHCNGNFSGHNCGTCRPGWRGAACDQRVLIVRRNLLDLSKEEKNHFVRALDMAKRTTHPLFVIATRRSEEILGPDGNTPQFENISIYNYFVWTHYYSVKKTFLGVGQESFGEVDFSHEGPAFLTWHRYHLLRLEKDMQEMLQEPSFSLPYWNFATGKNVCDICTDDLMGSRSNFDSTLISPNSVFSQWRVVCDSLEDYDTLGTLCNSTEDGPIRRNPAGNVARPMVQRLPEPQDVAQCLEVGLFDTPPFYSNSTNSFRNTVEGYSDPTGKYDPAVRSLHNLAHLFLNGTGGQTHLSPNDPIFVLLHTFTDAVFDEWLRRYNADISTFPLENAPIGHNRQYNMVPFWPPVTNTEMFVTAPDNLGYTYEIQWPS 470
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464      


Chain D from PDB  Type:PROTEIN  Length:446
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee.hhhhhhhhhhh..............hhhhh....eeeee.............................eeeee...ee.....ee...ee.....ee..eee.hhhhhhhhhhhhhhhhhhhhhhh....eeee..hhhhh.........ee..hhhhhhhhhhhhh.......................hhhhhhhhhhhhhhhhhhhhhh........................................hhhhh......hhhhhhhhh....................hhhhh...hhhhhhhhh................hhhhhhh..............hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh.............................hhhhhh.hhhhhh.eee...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5m8m D  25 QFPRQCATVEALRSGMCCPDLSPVSGPGTDRCGSSSGRGRCEAVTADSRPHSPQYPHDGRDDREVWPLRFFNRTCHCNGNFSGHNCGTCRPGWRGAACDQRVLIVRRNLLDLSKEEKNHFVRALDMAKRTTHPLFVIATRRSEEILGPDGNTPQFENISIYNYFVWTHYYSVKKTFLGVGQESFGEVDFSHEGPAFLTWHRYHLLRLEKDMQEMLQEPSFSLPYWNFATGKNVCDICTDDLMGSRSNFDSTLISPNSVFSQWRVVCDSLEDYDTLGTLCNSTEDGPIRRNPAGNVARPMVQRLPEPQDVAQCLEVGLFDTPPFYSNSTNSFRNTVEGYSDPTGKYDPAVRSLHNLAHLFLNGTGGQTHLSPNDPIFVLLHTFTDAVFDEWLRRYNADISTFPLENAPIGHNRQYNMVPFWPPVTNTEMFVTAPDNLGYTYEIQWPS 470
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5M8M)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5M8M)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5M8M)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 5M8M)

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    FUC  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    KOJ  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    MAN  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    NAG  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    ZN  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    AD1  [ RasMol ]  +environment [ RasMol ]
    AD2  [ RasMol ]  +environment [ RasMol ]
    AD3  [ RasMol ]  +environment [ RasMol ]
    AD4  [ RasMol ]  +environment [ RasMol ]
    AD5  [ RasMol ]  +environment [ RasMol ]
    AD6  [ RasMol ]  +environment [ RasMol ]
    AD7  [ RasMol ]  +environment [ RasMol ]
    AD8  [ RasMol ]  +environment [ RasMol ]
    AD9  [ RasMol ]  +environment [ RasMol ]
    AE1  [ RasMol ]  +environment [ RasMol ]
    AE2  [ RasMol ]  +environment [ RasMol ]
    AE3  [ RasMol ]  +environment [ RasMol ]
    AE4  [ RasMol ]  +environment [ RasMol ]
    AE5  [ RasMol ]  +environment [ RasMol ]
    AE6  [ RasMol ]  +environment [ RasMol ]
    AE7  [ RasMol ]  +environment [ RasMol ]
    AE8  [ RasMol ]  +environment [ RasMol ]
    AE9  [ RasMol ]  +environment [ RasMol ]
    AF1  [ RasMol ]  +environment [ RasMol ]
    AF2  [ RasMol ]  +environment [ RasMol ]
    AF3  [ RasMol ]  +environment [ RasMol ]
    AF4  [ RasMol ]  +environment [ RasMol ]
    AF5  [ RasMol ]  +environment [ RasMol ]
    AF6  [ RasMol ]  +environment [ RasMol ]
    AF7  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Pro A:345 - Pro A:346   [ RasMol ]  
    Pro B:345 - Pro B:346   [ RasMol ]  
    Pro C:345 - Pro C:346   [ RasMol ]  
    Pro D:345 - Pro D:346   [ RasMol ]  
    Trp A:444 - Pro A:445   [ RasMol ]  
    Trp A:90 - Pro A:91   [ RasMol ]  
    Trp B:444 - Pro B:445   [ RasMol ]  
    Trp B:90 - Pro B:91   [ RasMol ]  
    Trp C:444 - Pro C:445   [ RasMol ]  
    Trp C:90 - Pro C:91   [ RasMol ]  
    Trp D:444 - Pro D:445   [ RasMol ]  
    Trp D:90 - Pro D:91   [ RasMol ]  
    Val A:441 - Pro A:442   [ RasMol ]  
    Val B:441 - Pro B:442   [ RasMol ]  
    Val C:441 - Pro C:442   [ RasMol ]  
    Val D:441 - Pro D:442   [ RasMol ]  
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]
    Biological Unit 3  [ Jena3D ]
    Biological Unit 4  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym. Unit PNG format | Asym. Unit - sites PNG format | Biol. Unit 1 PNG format | Biol. Unit 1 - sites PNG format | Biol. Unit 2 PNG format | Biol. Unit 3 PNG format | Biol. Unit 4 PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  5m8m
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  TYRP1_HUMAN | P17643
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  1.14.18.-
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  TYRP1_HUMAN | P17643
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TYRP1_HUMAN | P17643: 5m8l 5m8n 5m8o 5m8p 5m8q 5m8r 5m8t

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5M8M)