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(-) Description

Title :  BAT INFLUENZA A/H17N10 POLYMERASE BOUND TO FOUR HEPTAD REPEATS OF SERINE 5 PHOSPHORYLATED POL II CTD
 
Authors :  M. Lukarska, A. Pflug, S. Cusack
Date :  14 Oct 16  (Deposition) - 21 Dec 16  (Release) - 18 Jan 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym./Biol. Unit :  A,B,C,R,V,X,Y
Keywords :  Influenza Rna-Dependent Rna Polymerase, Vrna Promoter, Pol Ii Serine 5 Phosphorylated Ctd Peptide, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Lukarska, G. Fournier, A. Pflug, P. Resa-Infante, S. Reich, N. Naffakh, S. Cusack
Structural Basis Of An Essential Interaction Between Influenza Polymerase And Pol Ii Ctd.
Nature V. 541 117 2017
PubMed-ID: 28002402  |  Reference-DOI: 10.1038/NATURE20594

(-) Compounds

Molecule 1 - POLYMERASE ACIDIC PROTEIN
    Chains: A
    Engineered: YES
    Expression System: TRICHOPLUSIA NI
    Expression System Common: CABBAGE LOOPER
    Expression System Taxid: 7111
    Gene: PA
    Organism Scientific: INFLUENZA A VIRUS (A/LITTLE YELLOW-SHOULDERED BAT/GUATEMALA/060/2010(H17N10))
    Organism Taxid: 1129347
    Other Details: N-TERMINAL LINKER
 
Molecule 2 - RNA-DIRECTED RNA POLYMERASE CATALYTIC SUBUNIT
    Chains: B
    EC Number: 2.7.7.48
    Engineered: YES
    Expression System: TRICHOPLUSIA NI
    Expression System Common: CABBAGE LOOPER
    Expression System Taxid: 7111
    Gene: PB1
    Organism Scientific: INFLUENZA A VIRUS (A/LITTLE YELLOW-SHOULDERED BAT/GUATEMALA/060/2010(H17N10))
    Organism Taxid: 1129347
    Other Details: N-TERMINAL LINKER
 
Molecule 3 - POLYMERASE BASIC PROTEIN 2
    Chains: C
    Engineered: YES
    Expression System: TRICHOPLUSIA NI
    Expression System Common: CABBAGE LOOPER
    Expression System Taxid: 7111
    Gene: PB2
    Organism Scientific: INFLUENZA A VIRUS (A/LITTLE YELLOW-SHOULDERED BAT/GUATEMALA/060/2010(H17N10))
    Organism Taxid: 1129347
    Other Details: N-TERMINAL LINKER C-TERMINAL LINKER AND STREP TAG AND TEV SITE
 
Molecule 4 - RNA (5'-R(*UP*AP*UP*AP*CP*CP*UP*CP*UP*GP*CP*UP*U)-3')
    Chains: R
    Engineered: YES
    Organism Scientific: INFLUENZA A VIRUS
    Organism Taxid: 11320
    Other Details: 3 PRIME END OF INFLUENZA VRNA PROMOTER
    Synthetic: YES
 
Molecule 5 - RNA 5'-PAGUAGUAACAAGAGGG
    Chains: V
    Engineered: YES
    Organism Scientific: INFLUENZA A VIRUS
    Organism Taxid: 11320
    Other Details: 5 PRIME END OF INFLUENZA VRNA PROMOTER
    Synthetic: YES
 
Molecule 6 - TYR-SER-PRO-THR-SEP-PRO
    Chains: X, Y
    Engineered: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Other Details: SYNTHETIC PEPTIDE CORRESPONDING TO 4 HEPTAD REPEATS OF SERINE 5 PHOSPHORYLATED POL II CTD
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1234567
Asymmetric/Biological Unit : ABCRVXY

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 18)

Asymmetric/Biological Unit (3, 18)
No.NameCountTypeFull Name
1PO415Ligand/IonPHOSPHATE ION
2SEP2Mod. Amino AcidPHOSPHOSERINE
3ZN1Ligand/IonZINC ION

(-) Sites  (18, 18)

Asymmetric Unit (18, 18)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:421binding site for residue ZN A 801
02AC2SOFTWAREASP A:524 , ASN A:527binding site for residue PO4 A 802
03AC3SOFTWARECYS A:276 , THR A:277 , ARG A:279 , ASN A:691 , PRO A:693binding site for residue PO4 A 803
04AC4SOFTWAREASN A:331binding site for residue PO4 A 804
05AC5SOFTWAREASP B:305 , THR B:307 , LYS B:308 , LYS B:481 , HOH B:906 , HOH B:973binding site for residue PO4 B 801
06AC6SOFTWAREARG B:560 , THR B:570 , ARG B:571binding site for residue PO4 B 802
07AC7SOFTWAREGLY B:275 , ASN B:276 , GLU B:277 , PHE C:217 , PO4 C:801binding site for residue PO4 B 803
08AC8SOFTWAREARG A:578 , PHE B:512 , LEU B:550 , ASP B:554binding site for residue PO4 B 804
09AC9SOFTWARETRP B:309 , ASN B:310 , GLN B:313 , PHE B:412 , ASN B:413 , SER B:416 , SER B:444 , HOH B:932binding site for residue PO4 B 805
10AD1SOFTWAREGLU A:656 , LYS A:659 , LYS B:235 , LYS B:481binding site for residue PO4 B 806
11AD2SOFTWARELYS B:531 , ILE B:535 , LEU C:218 , VAL C:229binding site for residue PO4 B 807
12AD3SOFTWAREGLY B:274 , GLU B:277 , PO4 B:803 , ARG C:144 , ARG C:216 , PHE C:217binding site for residue PO4 C 801
13AD4SOFTWAREARG C:264 , GLU C:305 , GLN C:306 , SER C:519binding site for residue PO4 C 802
14AD5SOFTWAREMET C:53 , LYS C:54 , TYR C:55binding site for residue PO4 C 803
15AD6SOFTWAREASN B:16 , ARG B:498 , GLU C:662 , ILE C:666binding site for residue PO4 C 804
16AD7SOFTWAREPRO B:701 , ARG B:721 , PHE C:168 , PRO C:169 , ASN C:170 , GLU C:171binding site for residue PO4 C 805
17AD8SOFTWARELYS A:630 , ARG A:633 , THR X:4 , HOH X:101binding site for Ligand residues SEP X 5 through PRO X 6 bound to THR X 4
18AD9SOFTWAREMET A:288 , LYS A:289 , TRP A:417 , ARG A:449 , SER Y:16 , PRO Y:17 , THR Y:18 , SER Y:21 , TYR Y:22binding site for Ligand residues SEP Y 19 through PRO Y 20 bound to THR Y 18

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5M3H)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Leu B:271 -Pro B:272

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5M3H)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5M3H)

(-) Exons   (0, 0)

(no "Exon" information available for 5M3H)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:699
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhh..ee.....ee...........ee........hhhhhhhhhhhhhhhh..........eee....eeeee......hhhhhhhhh........eeee.......ee.hhh...hhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhh......hhhhhhhhhhhh...hhhhhhhhhh........ee..............................eeee........hhhhhhhhhhh....eeeeeeee.....hhhhhhhhhhhhhhhhhh......ee..hhhhhhhh......eeehhhhhh.....ee...........hhhhhhhhhhhh....ee...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeeeeeeee....eeeeeeeeeee..........eeeeeeeeee..hhhhhhhhhh..eeeeeeeeeee....eeeeeeeeeeeeeeeehhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh..hhhhhhhh....eeeeee..eeeeehhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh....ee.hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5m3h A   1 MENFVRTNFNPMILERAEKTMKEYGENPQNEGNKFAAISTHMEVCFMYSDFHFIDLEGNTIVKENDDDNAMLKHRFEIIEGQERNIAWTIVNSICNMTENSKPRFLPDLYDYKTNKFIEIGVTRRKVEDYYYEKASKLKGENVYIHIFSFDGEEMATDDEYILDEESRARIKTRLFVLRQELATALEEEFSYPPTFQRLANQSLPPSFKDYHQFKAYVSSFKANGNIEAKLGAMSEKVNAQIESFDPRTIRELELPEGKFCTQRSKFLLMDAMKLSVLNPAHEGEGIPMKDAKACLDTFWGWKKATIIKKHEKGVNTNYLMIWEQLLESIKEMEGKFLNLKKTNHLKWGLGEGQAPEKMDFEDCKEVPDLFQYKSEPPEKRKLASWIQSEFNKASELTNSNWIEFDELGNDVAPIEHIASRRRNFFTAEVSQCRASEYIMKAVYINTALLNSSCTAMEEYQVIPIITKCRDTSGQRRTNLYGFIIKGRSHLRNDTDVVNFISLEFSLTDPRNEIHKWEKYCVLEIGDMEIRTSISTIMKPVYLYVRTNGTSKIKMKWGMEMRRCLLQSLQQVESMIEAESAVKEKDMTEPFFRNRENDWPIGESPQGIEKGTIGKVCRVLLAKSVFNSIYASAQLEGFSAESRKLLLLIQAFRDNLDPGTFDLKGLYEAIEECIINDPWVLLNASWFNSFLKAVQLSMG 714
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180    || 205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545       555       565       575       585       595       605       615       625       635       645       655       665       675       685       695       705         
                                                                                                                                                                                                                  185|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
                                                                                                                                                                                                                   201                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 


Chain B from PDB  Type:PROTEIN  Length:750
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .ee.hhhhhhh..hhhhhhhhh............hhhhhhhhhhhhhhhh...eeee......eeee................hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh....eee....eeehhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh..eeeeeeeeeeeeeee..eeeeeeeeeeeeeeehhhhhhhhhheeeeee...........eeee.hhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhh.....eeeeeeee........hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh.eee....eeeee....eeeee.hhhhh.......hhhhhhhhhhhhhhee..eee...........hhhhhhhhhhhhh.hhhhhh..eeeeeeee..eeeeeeee.hhhhhhhhhhhhhhhhhh..........eeee..eeee..eeee......hhhhhhhh.....hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhh.hhhhhhhhhh.....hhhhh..hhhhhhhhhhhhhhhhhhh..........hhhhh.eeee.....eeee..........ee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5m3h B   1 MDVNPMLIFLKVPVQNAISTTFPYTGDPPYSHGTGTGYTMDTVIRTHDYSSRGIWKTNSETGAQQLNPIDGPLPEDNEPSGYAQTDCVLELIEGLDRSHPGLFETACQETIDAIQQTRVDKLTQGRQTYDWTLNRNQPAATALANTIEVFRKNGYKLNESGRLIDFLKDVLLSFENDSMEVTTHFQKKKRIRDNKKMITQRTIGKKRVKLTKKNYLIRALTLNTMTKDAERGKLKRRAIATPGMQIRGFVYFVELLARNICERLEQSGLPVGGNEKKAKLANVIKKMMAKSTDEELSYTITGDNTKWNENQNPRIFLAMVLRITAGQPEWFRDLLAVAPIMFSNKVARLGRGYMFESKSMHLRTQISAENLSDINLRYFNEDTKKKIEKIRHLMVEGTASLSPGMMMGMFNMLSTVLGVSVLNLGQREILKRTYWWDGLQSSDDFALIINGHFKEDIQQGVNHFYRTCKLVGINMSQKKSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVAGNNESADMSIGTTVIKTNMINNDLGPATAQMAIQLFIKDYRYTYRCHRGDTNLETRRTKSIKRLWTETISKAGLLVADGGPNPYNLRNLHIPEVCLKWSLMDPDYRGRLCNPNNPFVHHMEVESTNLAVVMPGPAKSLEYDAVATTHSWTPKRNRSILNTNQRGILEDERIYQKCCQVFEKFFPSSTYRRPIGMASMLDAMLSRARIDARIDLESGRISSQDFSEITNTCKAIEALK 754
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190   ||  202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572       582       592       602       612       622       632       642    || 654       664       674       684       694       704       714       724       734       744       754
                                                                                                                                                                                                                           194|                                                                                                                                                                                                                                                                                                                                                                                                                                                               647|                                                                                                        
                                                                                                                                                                                                                            197                                                                                                                                                                                                                                                                                                                                                                                                                                                                650                                                                                                        


Chain C from PDB  Type:PROTEIN  Length:730
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhh.....eee..hhhhhh..........eeeee......eeehhhhhhhhhhhh......hhhhhhhhhhhhhhhhhh.eeeeeee.....eeeeee........hhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhh.....hhhhhhhhhhhhhh..eeeeee....hhhhhhhhhhhh...eeeeee.....hhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhee..eehhhhhhhh...hhhhhhhhhhh......eeee..eeeeeeee..eeeeeeee.....eeeeeeee..eeeeee...eeeeeeee..eeeeeeeee.hhhhhhhhhhhhhhhh.hhhhhhh............hhhhhhhhhhhhhhhhhhhhhheee........ee.....ee..eee..eee....eee.....eee....eeehhhhh..........ee..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhh...........eeeeee..eeeeee........eee....eeee..ee....hhhhh.............eeeeee.hhhhh.eehhhhhhhh....eeeeeee..eeeeeee...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5m3h C  -1 SGMERIKELMEMVKNSRMREILTTTSVDHMAVIKKYTSGRQEKNPALRMKWMMAMKYPISASSRIREMIPEKDEDGNTLWTNTKDAGSNRVLVSPNAVTWWNRAGPVSDVVHYPRVYKMYFDRLERLTHGTFGPVKFYNQVKVRKRVDINPGHKDLTSREAQEVIMEVVFPNEVGARTLSSDAQLTITKEKKEELKNCKISPIMVAYMLERELVRRTRFLPIAGATSSTYVEVLHLTQGTCWEQQYTPGGEAENDDLDQTLIIASRNIVRRSIVAIDPLASLLSMCHTTSISSEPLVEILRSNPTDEQAVNICKAALGIRINNSFSFGGYNFKRVKGSSQRTEKAVLTGNLQTLTMTIFEGYEEFNVSGKRASAVLKKGAQRLIQAIIGGRTLEDILNLMITLMVFSQEEKMLKAVRGDLNFVNQRLNPMYQLLRHFQKDSSTLLKNWGTEEIDPIMGIAGIMPDGTINKTQTLMGVRLSQIRVNIDKYLRVRNEKGELLISPEEVSEAQGQEKLPINYNSSLMWEVNGPESILTNTYHWIIKNWELLKTQWMTDPTVLYNRIEFEPFQTLIPKGNRAIYSGFTRTLFQQMRDVEGTFDSIQIIKLLPFSAHPPSLGRTQFSSFTLNIRGAPLRLLIRGNSQVFNYNQMENVIIVLGKSVGSPERSILTESSSIESAVLRGFLILGKANSKYGPVLTIGELDKLGRGEKANVLIGQGDTVLVMKRKRDSS 742
                                     8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418  ||   431       441       451       461       471       481||     502       512       522       532       542       552       562       572       582       592       602       612       622       632       642       652       662       672       682       692       702       712       722       732       742
                                                                                                                                                                                                                                                                                                                                                                                                                                                                421|                                                      482|                                                                                                                                                                                                                                                        
                                                                                                                                                                                                                                                                                                                                                                                                                                                                 425                                                       494                                                                                                                                                                                                                                                        


Chain R from PDB  Type:DNA/RNA  Length:13
                                             
                 5m3h R   1 UAUACCUCUGCUU  13
                                    10   


Chain V from PDB  Type:RNA  Length:16
                                                
                 5m3h V   1 AGUAGUAACAAGAGGG  16
                                    10      


Chain X from PDB  Type:PROTEIN  Length:6
                                      
               SCOP domains ------ SCOP domains
               CATH domains ------ CATH domains
               Pfam domains ------ Pfam domains
         Sec.struct. author ...... Sec.struct. author
                 SAPs(SNPs) ------ SAPs(SNPs)
                    PROSITE ------ PROSITE
                 Transcript ------ Transcript
                 5m3h X   1 YSPTsP   6
                                | 
                                5-SEP


Chain Y from PDB  Type:PROTEIN  Length:10
                                          
               SCOP domains ---------- SCOP domains
               CATH domains ---------- CATH domains
               Pfam domains ---------- Pfam domains
         Sec.struct. author .......... Sec.struct. author
                 SAPs(SNPs) ---------- SAPs(SNPs)
                    PROSITE ---------- PROSITE
                 Transcript ---------- Transcript
                 5m3h Y  13 PSYSPTsPSY  22
                                  | 22
                                 19-SEP
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5M3H)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5M3H)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5M3H)

(-) Gene Ontology  (45, 62)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RPB1_HUMAN | P24928: 2ghq 2ght 2lto 3d9k 3d9l 3d9m 3d9n 3d9o 3d9p 4jxt 5iy6 5iy7 5iy8 5iy9 5iya 5iyb 5iyc 5iyd 5m3j
UniProtKB/TrEMBL
        H6QM90_9INFA | H6QM90: 4wsb
        H6QM91_9INFA | H6QM91: 4wsb
        H6QM92_9INFA | H6QM92: 4nfz 4wsb

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5M3H)