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(-) Description

Title :  BAT INFLUENZA A POLYMERASE WITH BOUND VRNA PROMOTER
 
Authors :  S. Cusack, A. Pflug, D. Guilligay, S. Reich
Date :  26 Oct 14  (Deposition) - 19 Nov 14  (Release) - 24 Dec 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.65
Chains :  Asym./Biol. Unit :  A,B,C,R,V
Keywords :  Transferase-Rna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Reich, D. Guilligay, A. Pflug, H. Malet, I. Berger, T. Crepin, D. Hart, T. Lunardi, M. Nanao, R. W. Ruigrok, S. Cusack
Structural Insight Into Cap-Snatching And Rna Synthesis By Influenza Polymerase.
Nature V. 516 355 2014
PubMed-ID: 25409151  |  Reference-DOI: 10.1038/NATURE14009
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - POLYMERASE PA
    Chains: A
    Engineered: YES
    Expression System: UNIDENTIFIED BACULOVIRUS
    Expression System Cell Line: HIGHFIVE
    Expression System Plasmid: PKL-PBAC
    Expression System Taxid: 10469
    Gene: PA
    Organism Scientific: INFLUENZA A VIRUS
    Organism Taxid: 1129347
    Other Details: N-TERMINAL EXTENSION: HIS-TAG C-TERMINAL EXTENSION: LINKER AND TEV SITE
    Strain: A/LITTLE YELLOW-SHOULDERED BAT/GUATEMALA/060/2010(H17N10)
 
Molecule 2 - RNA-DIRECTED RNA POLYMERASE CATALYTIC SUBUNIT
    Chains: B
    EC Number: 2.7.7.48
    Engineered: YES
    Expression System: UNIDENTIFIED BACULOVIRUS
    Expression System Cell Line: HIGHFIVE
    Expression System Plasmid: PKL-PBAC
    Expression System Taxid: 10469
    Gene: PB1
    Organism Scientific: INFLUENZA A VIRUS
    Organism Taxid: 1129347
    Other Details: N-TERMINAL EXTENSION: LINKER C-TERMINAL EXTENSION: LINKER AND TEV SITE
    Strain: A/LITTLE YELLOW-SHOULDERED BAT/GUATEMALA/060/2010(H17N10)
 
Molecule 3 - POLYMERASE PB2
    Chains: C
    Engineered: YES
    Expression System: UNIDENTIFIED BACULOVIRUS
    Expression System Cell Line: HIGHFIVE
    Expression System Plasmid: PKL-PBAC
    Expression System Taxid: 10469
    Gene: PB2
    Organism Scientific: INFLUENZA A VIRUS
    Organism Taxid: 1129347
    Other Details: N-TERMINAL EXTENSION: LINKER C-TERMINAL EXTENSION: STREP-TAG AND TEV SITE
    Strain: A/LITTLE YELLOW-SHOULDERED BAT/GUATEMALA/060/2010(H17N10)
 
Molecule 4 - INFLUENZA A POLYMERASE VRNA PROMOTER 3' END
    Chains: R
    Engineered: YES
    Organism Scientific: UNIDENTIFIED INFLUENZA VIRUS
    Organism Taxid: 11309
    Synthetic: YES
 
Molecule 5 - INFLUENZA A POLYMERASE VRNA PROMOTER 5' END
    Chains: V
    Engineered: YES
    Organism Scientific: UNIDENTIFIED INFLUENZA VIRUS
    Organism Taxid: 11309
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12345
Asymmetric/Biological Unit : ABCRV

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 17)

Asymmetric/Biological Unit (2, 17)
No.NameCountTypeFull Name
1PO416Ligand/IonPHOSPHATE ION
2ZN1Ligand/IonZINC ION

(-) Sites  (17, 17)

Asymmetric Unit (17, 17)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:421 , HIS B:562binding site for residue ZN A 801
02AC2SOFTWARESER A:410 , GLU A:411 , LEU A:412 , LYS A:630 , ARG A:633binding site for residue PO4 A 802
03AC3SOFTWARELYS A:289 , THR A:413 , ASN A:414 , ARG A:449 , GLU A:452binding site for residue PO4 A 803
04AC4SOFTWAREASP A:524 , ASN A:527binding site for residue PO4 A 804
05AC5SOFTWARECYS A:276 , THR A:277 , ARG A:279 , ASN A:691 , PRO A:693binding site for residue PO4 A 805
06AC6SOFTWAREASP B:305 , THR B:307 , LYS B:308 , HOH B:908binding site for residue PO4 B 801
07AC7SOFTWAREARG B:560 , THR B:570 , ARG B:571binding site for residue PO4 B 802
08AC8SOFTWAREGLY B:274 , ASN B:276 , GLU B:277 , PO4 B:809 , PHE C:217 , PO4 C:803binding site for residue PO4 B 803
09AC9SOFTWAREGLU A:575 , ARG A:577 , ARG A:578 , PHE B:512 , LEU B:550 , ASP B:554binding site for residue PO4 B 804
10AD1SOFTWAREASN B:16 , ARG B:498 , GLU C:662 , ILE C:666binding site for residue PO4 B 805
11AD2SOFTWARETRP B:309 , ASN B:310 , GLN B:313 , PHE B:412 , ASN B:413 , SER B:416 , SER B:444binding site for residue PO4 B 806
12AD3SOFTWAREARG B:602 , ASN B:603 , LEU C:125binding site for residue PO4 B 807
13AD4SOFTWAREASP B:445binding site for residue PO4 B 808
14AD5SOFTWAREGLY B:274 , GLY B:275 , LYS B:653 , PO4 B:803binding site for residue PO4 B 809
15AD6SOFTWAREARG C:264 , GLU C:305 , GLN C:306 , GLN C:338 , SER C:519binding site for residue PO4 C 801
16AD7SOFTWAREMET C:53 , LYS C:54 , TYR C:55binding site for residue PO4 C 802
17AD8SOFTWAREGLY B:274 , GLU B:277 , PO4 B:803 , ARG C:144 , ARG C:216 , PHE C:217binding site for residue PO4 C 803

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4WSB)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Leu B:271 -Pro B:272

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4WSB)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4WSB)

(-) Exons   (0, 0)

(no "Exon" information available for 4WSB)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:699
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhh.eee.....eee..........ee.eee....hhhhhhhhhhhhhhh...........eee....eeeeee.....hhhhhhhhhh.......eeee.......ee.hhh...hhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhh.....hhhhhhhhhhh....hhhhhhhhhh........ee..............................eeee........hhhhhhhhhhhh...eeeeeeee.....hhhhhhhhhhhhhhhhhh......ee..hhhhhhhh......eeee.hhhh....eee............hhhhhhhhhhh....ee...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeeeeeeee....eeeeeeeeeee..........eeeeeeeeee..hhhhhh......eeeeeeeeeee....eeeeeeeeeeeeeeeehhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh..hhhhhhhh....eeeee....eeeehhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh....ee.hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4wsb A   1 MENFVRTNFNPMILERAEKTMKEYGENPQNEGNKFAAISTHMEVCFMYSDFHFIDLEGNTIVKENDDDNAMLKHRFEIIEGQERNIAWTIVNSICNMTENSKPRFLPDLYDYKTNKFIEIGVTRRKVEDYYYEKASKLKGENVYIHIFSFDGEEMATDDEYILDEESRARIKTRLFVLRQELATALEEEFSYPPTFQRLANQSLPPSFKDYHQFKAYVSSFKANGNIEAKLGAMSEKVNAQIESFDPRTIRELELPEGKFCTQRSKFLLMDAMKLSVLNPAHEGEGIPMKDAKACLDTFWGWKKATIIKKHEKGVNTNYLMIWEQLLESIKEMEGKFLNLKKTNHLKWGLGEGQAPEKMDFEDCKEVPDLFQYKSEPPEKRKLASWIQSEFNKASELTNSNWIEFDELGNDVAPIEHIASRRRNFFTAEVSQCRASEYIMKAVYINTALLNSSCTAMEEYQVIPIITKCRDTSGQRRTNLYGFIIKGRSHLRNDTDVVNFISLEFSLTDPRNEIHKWEKYCVLEIGDMEIRTSISTIMKPVYLYVRTNGTSKIKMKWGMEMRRCLLQSLQQVESMIEAESAVKEKDMTEPFFRNRENDWPIGESPQGIEKGTIGKVCRVLLAKSVFNSIYASAQLEGFSAESRKLLLLIQAFRDNLDPGTFDLKGLYEAIEECIINDPWVLLNASWFNSFLKAVQLSMG 714
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180    || 205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545       555       565       575       585       595       605       615       625       635       645       655       665       675       685       695       705         
                                                                                                                                                                                                                  185|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
                                                                                                                                                                                                                   201                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 


Chain B from PDB  Type:PROTEIN  Length:745
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee.hhhhhhh..hhhhhhhhh............hhhhhhhhhhhhhhhh...eeee......eeee................hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh....eee....eeehhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh.....eeeeeeeeeeeee....eeeeeeeeeeeeehhhhhhhhhheeeeee...........eeee.hhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhh....eeeeeeee........hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh.ee.....eeeee....eeeeehhhhhh.......hhhhhhhhhhhhh.ee..eee...........hhhhhhhhhhhhh.hhhhhh..eeeeeeee..eeeeeeee.hhhhhhhhhhhhhhhhhh..........eeee..ee.....ee......hhhhhhhh.....hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhh.hhhhhhhhhh.....hhhhh..hhhhhhhhhhhhhhhhhhh................eeee.....eeee...............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4wsb B   1 MDVNPMLIFLKVPVQNAISTTFPYTGDPPYSHGTGTGYTMDTVIRTHDYSSRGIWKTNSETGAQQLNPIDGPLPEDNEPSGYAQTDCVLELIEGLDRSHPGLFETACQETIDAIQQTRVDKLTQGRQTYDWTLNRNQPAATALANTIEVFRKNGYKLNESGRLIDFLKDVLLSFENDSMEVTTHFQKKKRIRDNMITQRTIGKKRVKLTKKNYLIRALTLNTMTKDAERGKLKRRAIATPGMQIRGFVYFVELLARNICERLEQSGLPVGGNEKKAKLANVIKKMMAKSTDEELSYTITGDNTKWNENQNPRIFLAMVLRITAGQPEWFRDLLAVAPIMFSNKVARLGRGYMFESKSMHLRTQISAENLSDINLRYFNEDTKKKIEKIRHLMVEGTASLSPGMMMGMFNMLSTVLGVSVLNLGQREILKRTYWWDGLQSSDDFALIINGHFKEDIQQGVNHFYRTCKLVGINMSQKKSYINKTGTFFTSFFYRYGFVANFSMELPSFGVAGNNESADMSIGTTVIKTNMINNDLGPATAQMAIQLFIKDYRYTYRCHRGDTNLETRRTKSIKRLWTETISKAGLLVADGGPNPYNLRNLHIPEVCLKWSLMDPDYRGRLCNPNNPFVHHMEVESTNLAVVMPGPAKSLEYDAVATTHSWTPKRNRSILNTNQRGILEDERIYQKCCQVFEKFFPSSTYRRPIGMASMLDAMLSRARIDARIDLESGSSQDFSEITNTCKAIEALK 754
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190   ||  204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484     ||495       505       515       525       535       545       555       565       575       585       595       605       615       625       635       645 ||    657       667       677       687       697       707       717       727     ||739       749     
                                                                                                                                                                                                                           194|                                                                                                                                                                                                                                                                                                490|                                                                                                                                                        647|                                                                                733|                  
                                                                                                                                                                                                                            199                                                                                                                                                                                                                                                                                                 492                                                                                                                                                         650                                                                                 736                  


Chain C from PDB  Type:PROTEIN  Length:734
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhh........hhhhhhhhhh.....eeee.hhhhhh..........eeeee.....eeeehhhhhhhhhhhh......hhhhhhhhhhhhhhhhhh.eeeeeee.....eeeeee........hhhhhhhhhhhhhh..........hhhhhhhhhhhhhhh.....hhhhhhhhhhhhhh..eeeeee....hhhhhhhhhhhh...eeeeee.....hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhee...hhhhhhhhh...hhhhhhhhhhhh.....eeee..eeeeeee...eeeeeeee.....eeeeeeee..eeeeeee..eeeeeeee..eeeeeeeee.hhhhhhhhhhhhhhhh.hhhhhhh...............hhhhhhhhhhh..hhhhhhhhheee........ee.....ee..eee..eee.......eee.....eee....eeehhhhh..........ee..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhh...........eeeee....eeeee........eee....eeee..eeee....................eeeeee.hhhhh...............eeeeeee..eeeeeee..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4wsb C   0 SMERIKELMEMVKNSRMREILTTTSVDHMAVIKKYTSGRQEKNPALRMKWMMAMKYPISASSRIREMIPEKDEDGNTLWTNTKDAGSNRVLVSPNAVTWWNRAGPVSDVVHYPRVYKMYFDRLERLTHGTFGPVKFYNQVKVRKRVDINPGHKDLTSREAQEVIMEVVFPNEVGARTLSSDAQLTITKEKKEELKNCKISPIMVAYMLERELVRRTRFLPIAGATSSTYVEVLHLTQGTCWEQQYTPGGEAENDDLDQTLIIASRNIVRRSIVAIDPLASLLSMCHTTSISSEPLVEILRSNPTDEQAVNICKAALGIRINNSFSFGGYNFKRVKGSSQRTEKAVLTGNLQTLTMTIFEGYEEFNVSGKRASAVLKKGAQRLIQAIIGGRTLEDILNLMITLMVFSQEEKMLKAVRGDLNFVNRANQRLNPMYQLLRHFQKDSSTLLKNWGTEEIDPIMGIAGIMPDGTINKTQTLMGVRLSQNERIRVNIDKYLRVRNEKGELLISPEEVSEAQGQEKLPINYNSSLMWEVNGPESILTNTYHWIIKNWELLKTQWMTDPTVLYNRIEFEPFQTLIPKGNRAIYSGFTRTLFQQMRDVEGTFDSIQIIKLLPFSAHPPSLGRTQFSSFTLNIRGAPLRLLIRGNSQVFNYNQMENVIIVLGKSVGSPERSILTESSSIESAVLRGFLILGKANSKYGPVLTIGELDKLGRGEKANVLIGQGDTVLVMKRKRDS 741
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479  ||   497       507       517       527       537       547       557       567       577       587       597       607       617       627       637       647       657       667       677       687       697       707       717       727       737    
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            482|                                                                                                                                                                                                                                                          
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             491                                                                                                                                                                                                                                                          


Chain R from PDB  Type:DNA/RNA  Length:13
                                             
                 4wsb R   1 UAUACCUCUGCUU  13
                                    10   


Chain V from PDB  Type:RNA  Length:16
                                                
                 4wsb V   1 AGUAGUAACAAGAGGG  16
                                    10
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4WSB)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4WSB)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4WSB)

(-) Gene Ontology  (21, 31)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

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        H6QM90_9INFA | H6QM90: 5m3h
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