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(-) Description

Title :  HUMAN OGT IN COMPLEX WITH UDP AND FUSED SUBSTRATE PEPTIDE (HCF1)
 
Authors :  O. Raimi, K. Rafie, V. Kapuria, W. Herr, D. Van Aalten
Date :  19 Sep 16  (Deposition) - 12 Jul 17  (Release) - 12 Jul 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym./Biol. Unit :  A
Keywords :  Glycosylation, Signalling, O-Glcnac, O-Glcnac Transferase, Substrate Recognition, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Rafie, O. Raimi, A. T. Ferenbach, V. S. Borodkin, V. Kapuria, D. M. F. Van Aalten
Recognition Of A Glycosylation Substrate By The O-Glcnac Transferase Tpr Repeats.
Open Biol V. 7 2017
PubMed-ID: 28659383  |  Reference-DOI: 10.1098/RSOB.170078

(-) Compounds

Molecule 1 - HOST CELL FACTOR 1,UDP-N-ACETYLGLUCOSAMINE--PEPTIDE N- ACETYLGLUCOSAMINYLTRANSFERASE 110 KDA SUBUNIT
    Chains: A
    EC Number: 2.4.1.255
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID, PLASMID
    Gene: HCFC1, HCF1, HFC1, OGT
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: HCF-1,C1 FACTOR,CFF,VCAF,VP16 ACCESSORY PROTEIN,O-GLCNAC TRANSFERASE SUBUNIT P110,O-LINKED N-ACETYLGLUCOSAMINE TRANSFERASE 110 KDA SUBUNIT,OGT

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 4)

Asymmetric/Biological Unit (3, 4)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2PO42Ligand/IonPHOSPHATE ION
3UDP1Ligand/IonURIDINE-5'-DIPHOSPHATE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPRO A:559 , ASN A:838 , GLN A:839 , LYS A:842 , LEU A:866 , VAL A:895 , ALA A:896 , LYS A:898 , HIS A:901 , ARG A:904 , HIS A:920 , THR A:921 , THR A:922 , ASP A:925 , HOH A:1322 , HOH A:1399 , HOH A:1469 , HOH A:1505 , HOH A:1630binding site for residue UDP A 1201
2AC2SOFTWAREGLY A:365 , LYS A:366 , LEU A:367 , GLN A:368 , GLU A:369 , HOH A:1306 , HOH A:1449binding site for residue GOL A 1202
3AC3SOFTWAREARG A:328 , ARG A:491 , LEU A:492 , HOH A:1431 , HOH A:1689binding site for residue PO4 A 1203
4AC4SOFTWAREASN A:962 , ARG A:963 , HOH A:1309binding site for residue PO4 A 1204

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5LWV)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Phe A:868 -Pro A:869

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5LWV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5LWV)

(-) Exons   (0, 0)

(no "Exon" information available for 5LWV)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:711
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .................hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh......hhhhhh....hhhhhhhhhhhhhhhhhhhhhh...........hhhhh..eeeeeee.....hhhhhhhhhhhhhh....eeeeeee......hhhhhhhhhhh.eeee.hhh.hhhhhhhhhhhh...eeee.........hhhhhh....eeee..............eeee.....hhhhhhhh..eeee........hhhhhhhhhh..eee........eeee..hhhhhhhh....ee...eee..hhhhhhhhhhhhh...eeee..eeeee..hhhhhhhhhhh.......eeeee.hhhh......eeee..hhhhhhhhhhhhhhhhhhhh...eeeeee.hhhhhhhhhhhhhhh..hhh.eeeee..hhhhhhhhhhhh.eee.......hhhhhhhhhh...ee.....hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5lwv A  297 ETHETGTTNTATTATGGGTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRLRVGYVSSDFGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMAEANHFIDLSQIPCNGKAADRIHQDGIHILVNMNGYTKGARNELFALRPAPIQAMWLGYPGTSGALFMDYIITDQETSPAEVAEQYSEKLAYMPHTFFIGDHANMFPHLKKKAVIDFKIYDNRIVLNGIDLKAFLDSLPDVKIVNMPVIPMNTIAEAVIEMINRGQIQITINGFSISNGLATTQINNKAATGEEVPRTIIVTTRSQYGLPEDAIVYCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGEPNIQQYAQNMGLPQNRIIFSPVAPKEEHVRRGQLADVCLDTPLCNGHTTGMDVLWAGTPMVTMPGETLASRVAASQLTCLGCLELIAKNRQEYEDIAVKLGTDLEYLKKVRGKVWKQRISSPLFNTKQYTMELERLYLQMWEHYAAGNKPDHMIKP 1029
                                   306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526       536       546       556       566       576       586       596       606       616       626       636       646       656       666       676       686       696       706       720       730       740   ||  768       778       788       798       808       818       828       838       848       858       868       878       888       898       908       918       928       938       948       958       968       978       988       998      1008      1018      1028 
                                                                                                                                                                                                                                                                                                                                                                                                                                                           714|                      744|                                                                                                                                                                                                                                                                          
                                                                                                                                                                                                                                                                                                                                                                                                                                                            719                       763
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5LWV)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5LWV)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5LWV)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 5LWV)

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  Cis Peptide Bonds
    Phe A:868 - Pro A:869   [ RasMol ]  
 

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  5lwv
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  HCFC1_HUMAN | P51610
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  OGT1_HUMAN | O15294
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  2.4.1.255
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        HCFC1_HUMAN | P51610: 4go6 4n39 4n3a 4n3b 4n3c
        OGT1_HUMAN | O15294: 1w3b 3pe3 3pe4 3tax 4ay5 4ay6 4cdr 4gyw 4gyy 4gz3 4gz5 4gz6 4n39 4n3a 4n3b 4n3c 4xi9 4xif 5bnw 5c1d 5hgv 5lvv

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5LWV)