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(-) Description

Title :  CRYSTAL STRUCTURE OF HCF-1 SELF-ASSOCIATION SEQUENCE 1
 
Authors :  J. Park, F. Lammers, W. Herr, J. Song
Date :  18 Aug 12  (Deposition) - 17 Oct 12  (Release) - 17 Jul 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B,C,D  (2x)
Biol. Unit 2:  A,B,C,D  (1x)
Biol. Unit 3:  A,B  (1x)
Biol. Unit 4:  C,D  (1x)
Keywords :  Tandem Fibronectin Repeat, Protein Interaction, Transcription, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  J. Park, F. Lammers, W. Herr, J. Song
Hcf-1 Self-Association Via An Interdigitated Fn3 Structure Facilitates Transcriptional Regulatory Complex Formation
Proc. Natl. Acad. Sci. Usa V. 109 17430 2012
PubMed-ID: 23045687  |  Reference-DOI: 10.1073/PNAS.1208378109

(-) Compounds

Molecule 1 - HCF N-TERMINAL CHAIN 1
    ChainsA, C
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPET21A, PET28A
    Expression System StrainB834 (DE3)
    Expression System Taxid562
    Expression System Vector TypePLASMID
    FragmentHCF-1 SAS1N, UNP RESIDUES 360-402
    GeneHOMO SAPIENS
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymHCF, HCF-1, C1 FACTOR, CFF, VCAF, VP16 ACCESSORY PROTEIN, HCF N-TERMINAL CHAIN 2, HCF N-TERMINAL CHAIN 3, HCF N-TERMINAL CHAIN 4, HCF N-TERMINAL CHAIN 5, HCF N-TERMINAL CHAIN 6
 
Molecule 2 - HCF C-TERMINAL CHAIN 1
    ChainsB, D
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    FragmentHCF-1 SAS1C-NLS, UNP RESIDUES 1806-2035
    GeneHCFC1, HCF1, HFC1
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymHCF, HCF-1, C1 FACTOR, CFF, VCAF, VP16 ACCESSORY PROTEIN, HCF C-TERMINAL CHAIN 2, HCF C-TERMINAL CHAIN 3, HCF C-TERMINAL CHAIN 4, HCF C-TERMINAL CHAIN 5, HCF C-TERMINAL CHAIN 6

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit ABCD
Biological Unit 1 (2x)ABCD
Biological Unit 2 (1x)ABCD
Biological Unit 3 (1x)AB  
Biological Unit 4 (1x)  CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 9)

Asymmetric Unit (2, 9)
No.NameCountTypeFull Name
1MSE5Mod. Amino AcidSELENOMETHIONINE
2SO44Ligand/IonSULFATE ION
Biological Unit 1 (2, 18)
No.NameCountTypeFull Name
1MSE10Mod. Amino AcidSELENOMETHIONINE
2SO48Ligand/IonSULFATE ION
Biological Unit 2 (2, 9)
No.NameCountTypeFull Name
1MSE5Mod. Amino AcidSELENOMETHIONINE
2SO44Ligand/IonSULFATE ION
Biological Unit 3 (2, 5)
No.NameCountTypeFull Name
1MSE3Mod. Amino AcidSELENOMETHIONINE
2SO42Ligand/IonSULFATE ION
Biological Unit 4 (2, 4)
No.NameCountTypeFull Name
1MSE2Mod. Amino AcidSELENOMETHIONINE
2SO42Ligand/IonSULFATE ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:374 , CYS B:1895 , ALA B:1896 , LYS B:2015BINDING SITE FOR RESIDUE SO4 B 2101
2AC2SOFTWAREARG B:1986 , LYS D:1919 , ASN D:1968BINDING SITE FOR RESIDUE SO4 B 2102
3AC3SOFTWAREALA C:368 , ARG C:369 , GLU D:1879BINDING SITE FOR RESIDUE SO4 C 501
4AC4SOFTWAREGLN C:398 , TRP D:1812 , LYS D:1863 , ILE D:1880BINDING SITE FOR RESIDUE SO4 D 2101

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4GO6)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4GO6)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4GO6)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4GO6)

(-) Exons   (0, 0)

(no "Exon" information available for 4GO6)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:41
                                                                          
               SCOP domains ----------------------------------------- SCOP domains
               CATH domains ----------------------------------------- CATH domains
               Pfam domains ----------------------------------------- Pfam domains
         Sec.struct. author ........eeeeeeee....eeeeee......eeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------- PROSITE
                 Transcript ----------------------------------------- Transcript
                4go6 A  360 ETEKPPPPARVQLVRANTNSLEVSWGAVATADSYLLQLQKY  400
                                   369       379       389       399 

Chain B from PDB  Type:PROTEIN  Length:168
                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeee...eeee.eee.....eee.....eeeeeeeeee..eeeee...eeee..........eeeeeeee..eeeeeee..........eeeeeeee...eeeeeeeee...eeeeehhhhh....ee...eeeeeeeeee........eeeeee......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                4go6 B 1811 QWFDVGVIKGTNVmVTHYFLPPDKKQELQPGTAYKFRVAGINACGRGPFSEISAFKTCLPGFPGAPCAIKISKSPDGAHLTWEPPSVTSGKIIEYSVYLAIQAQLAFmRVYCGPSPSCLVQSSSLSNAHIDYTTKPAIIFRIAARNEKGYGPATQVRWLQENKRPmSS 2020
                                  1820   |  1830  ||  1858      1868      1878      1888      1898      1908      1918      1928 ||   1951      1961      1971      1981      1991      2001||   |  
                                      1824-MSE 1833|                                                                          1930|    |                                                 2002|   |  
                                                1852                                                                           1944    |                                                  2014   |  
                                                                                                                                    1949-MSE                                                  2018-MSE

Chain C from PDB  Type:PROTEIN  Length:40
                                                                         
               SCOP domains ---------------------------------------- SCOP domains
               CATH domains ---------------------------------------- CATH domains
               Pfam domains ---------------------------------------- Pfam domains
         Sec.struct. author ..........eeeee....eeee........eeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------- PROSITE
                 Transcript ---------------------------------------- Transcript
                4go6 C  361 TEKPPPPARVQLVRANTNSLEVSWGAVATADSYLLQLQKY  400
                                   370       380       390       400

Chain D from PDB  Type:PROTEIN  Length:173
                                                                                                                                                                                                              
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee...eeee.ee.....ee.....eeeeeeeeee..eeeee...eeee..........eeeeeee...eeeeeee..........eeeeeee................eeeeeeeeee...eeeeehhhhh...ee.....eeeeeeeee........eeeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4go6 D 1811 QWFDVGVIKGTNVmVTHYFLPPKQELQPGTAYKFRVAGINACGRGPFSEISAFKTCLPGFPGAPCAIKISKSPDGAHLTWEPPSVTSGKIIEYSVYLAIQSSQAGGELKSSTPAQLAFmRVYCGPSPSCLVQSSSLSNAHIDYTTKPAIIFRIAARNEKGYGPATQVRWLQET 2003
                                  1820   |  1830 ||   1860      1870      1880      1890      1900      1910      1920      1930      1940      1950      1960      1970      1980      1990      2000   
                                      1824-MSE1832|                                                                                            1949-MSE                                                  
                                               1853                                                                                                                                                      

   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4GO6)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4GO6)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4GO6)

(-) Gene Ontology  (39, 39)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        HCFC1_HUMAN | P516104n39 4n3a 4n3b 4n3c 5lwv

(-) Related Entries Specified in the PDB File

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