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(-) Description

Title :  STRUCTURE OF THE EPIGENETIC ONCOGENE MMSET AND INHIBITION BY N-ALKYL SINEFUNGIN DERIVATIVES
 
Authors :  D. Tisi, P. Pathuri, T. Heightman
Date :  06 Sep 16  (Deposition) - 05 Oct 16  (Release) - 21 Dec 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.57
Chains :  Asym./Biol. Unit :  A
Keywords :  Lysine Methyltransferase Setd2 Set Domain, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. Tisi, E. Chiarparin, E. Tamanini, P. Pathuri, J. E. Coyle, A. Hold, F. P. Holding, N. Amin, A. C. Martin, S. J. Rich, V. Berdini, J. Yon, P. Acklam, R. Burke, L. Drouin, J. E. Harmer, F. Jeganathan, R. L. Van Montfort, Y. Newbatt, M. Tortorici, M. Westlake, A. Wood, S. Hoelder, T. D. Heightman
Structure Of The Epigenetic Oncogene Mmset And Inhibition B N-Alkyl Sinefungin Derivatives.
Acs Chem. Biol. V. 11 3093 2016
PubMed-ID: 27571355  |  Reference-DOI: 10.1021/ACSCHEMBIO.6B00308

(-) Compounds

Molecule 1 - HISTONE-LYSINE N-METHYLTRANSFERASE SETD2
    Chains: A
    EC Number: 2.1.1.43
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Variant: CODON PLUS RIL
    Gene: SETD2, HIF1, HYPB, KIAA1732, KMT3A, SET2, HSPC069
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: HIF-1,HUNTINGTIN YEAST PARTNER B,HUNTINGTIN-INTERACTING PROTEIN 1,HIP-1,HUNTINGTIN-INTERACTING PROTEIN B,LYSINE N- METHYLTRANSFERASE 3A,SET DOMAIN-CONTAINING PROTEIN 2,HSET2,P231HBP

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric/Biological Unit (2, 4)
No.NameCountTypeFull Name
1SFG1Ligand/IonSINEFUNGIN
2ZN3Ligand/IonZINC ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:1631 , CYS A:1678 , CYS A:1680 , CYS A:1685binding site for residue ZN A 1801
2AC2SOFTWARECYS A:1499 , CYS A:1501 , CYS A:1516 , CYS A:1520binding site for residue ZN A 1802
3AC3SOFTWARECYS A:1516 , CYS A:1529 , CYS A:1533 , CYS A:1539binding site for residue ZN A 1803
4AC4SOFTWARELYS A:1560 , GLY A:1561 , TRP A:1562 , ILE A:1602 , HIS A:1603 , TYR A:1604 , TYR A:1605 , ARG A:1625 , PHE A:1626 , ASN A:1628 , HIS A:1629 , TYR A:1666 , GLN A:1676 , LYS A:1677 , CYS A:1678 , PHE A:1679 , LEU A:1689 , HOH A:1974 , HOH A:1975 , HOH A:2044 , HOH A:2097binding site for residue SFG A 1804

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5LT8)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5LT8)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 5LT8)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:227
                                                                                                                                                                                                                                                                    
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee.hhhhhhhhhhhhhhh.......ee....ee............hhhhhhhh.......hhhhhh.........hhhhh............eeeee.....eeeee........eeee..eeeehhhhhhhhhhhhhhh......eeeee..eeeeeeeee.hhhhhee.....eeeeeeee..eeeeeeee........eeee................... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5lt8 A 1446 GPSCVMDDFRDPQRWKECAKQGKMPCYFDLIEENVYLTERKQCECTPLSKDERAQGEIACGEDCLNRLLMIECSSRCPNGDYCSNRRFQRKQHADVEVILTEKKGWGLRAAKDLPSNTFVLEYCGEVLDHKEFKARVKEYARNKNIHYYFMALKNDEIIDATQKGNCSRFMNHSCEPNCETQKWTVNGQLRVGFFTTKLVPSGSELTFDYQAQKCFCGSANCRGYLG 1690
                                  1455      1465      1475      1485||    1506      1516      1526      1536      1546      1556      1566      1576      1586      1596      1606      1616      1626      1636      1646      1656      1666||    1683       
                                                                 1486|                                                                                                                                                                     1667|               
                                                                  1498                                                                                                                                                                      1675
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5LT8)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5LT8)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5LT8)

(-) Gene Ontology  (34, 34)

Asymmetric/Biological Unit(hide GO term definitions)

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  5lt8
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  SETD2_HUMAN | Q9BYW2
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        SETD2_HUMAN | Q9BYW2: 2a7o 2mdc 2mdi 2mdj 4fmu 4h12 5jjy 5jlb 5jle 5lss 5lsx 5lsy 5lsz 5lt6 5lt7 5v21 5v22

(-) Related Entries Specified in the PDB File

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