4H12 - JenaLib

Title :   THE CRYSTAL STRUCTURE OF METHYLTRANSFERASE DOMAIN OF HUMAN SET DOMAIN-CONTAINING PROTEIN 2 IN COMPLEX WITH S-ADENOSYL-L-HOMOCYSTEINE

Authors :   M. F. Amaya, A. Dong, H. Zeng, F. Mackenzie, M. Bunnage, J. Weigelt, C. Bo C. H. Arrowsmith, A. M. Edwards, J. Min, H. Wu, Structural Genomics C (Sgc)

Date :   10 Sep 12 (Deposition) - 03 Oct 12 (Release) - 14 Nov 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.06

Chains :   Asym./Biol. Unit : A

Keywords :   Methyltransferase, Set Domain-Containing Protein 2, S-Adenosyl-L- Homocysteine, Structural Genomics, Structural Genomics Consortium, Sgc, Activator, Chromatin Regulator, Dna-Binding, Methylation, Nucleus, Phosphoprotein, Transcription, Transcription Regulation, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   W. Zheng, G. Ibanez, H. Wu, G. Blum, H. Zeng, A. Dong, F. Li, T. Hajian, A. Allali-Hassani, M. F. Amaya, A. Siarheyeva, W. Yu, P. J. Brown, M. Schapira, M. Vedadi, J. Min, M. Luo
Sinefungin Derivatives As Inhibitors And Structure Probes O Protein Lysine Methyltransferase Setd2.
J. Am. Chem. Soc. V. 134 18004 2012
PubMed-ID: 23043551 | Reference-DOI: 10.1021/JA307060P

Compounds

Molecule 1 - HISTONE-LYSINE N-METHYLTRANSFERASE SETD2
	Chains	:	A
	EC Number	:	2.1.1.43
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET28-LIC
	Expression System Strain	:	BL21-V2R-PRARE2
	Expression System Taxid	:	511693
	Expression System Vector Type	:	PLASMID
	Fragment	:	METHYLTRANSFERASE DOMAIN (UNP RESIDUES 1434-1711)
	Gene	:	SETD2, HIF1, HYPB, KIAA1732, KMT3A, SET2, HSPC069
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	HIF-1, HUNTINGTIN YEAST PARTNER B, HUNTINGTIN-INTERACTING PROTEIN 1, HIP-1, HUNTINGTIN-INTERACTING PROTEIN B, LYSINE N- METHYLTRANSFERASE 3A, SET DOMAIN-CONTAINING PROTEIN 2, HSET2, P231HBP

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 5)

Sites (5, 5)

Asymmetric Unit (5, 5)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	CYS A:1499 , CYS A:1501 , CYS A:1516 , CYS A:1520	BINDING SITE FOR RESIDUE ZN A 1801
2	AC2	SOFTWARE	CYS A:1516 , CYS A:1529 , CYS A:1533 , CYS A:1539	BINDING SITE FOR RESIDUE ZN A 1802
3	AC3	SOFTWARE	CYS A:1631 , CYS A:1678 , CYS A:1680 , CYS A:1685	BINDING SITE FOR RESIDUE ZN A 1803
4	AC4	SOFTWARE	LYS A:1560 , GLY A:1561 , TRP A:1562 , ILE A:1602 , HIS A:1603 , TYR A:1604 , TYR A:1605 , ARG A:1625 , PHE A:1626 , ASN A:1628 , HIS A:1629 , TYR A:1666 , ARG A:1670 , GLN A:1676 , LYS A:1677 , CYS A:1678 , PHE A:1679 , LEU A:1689 , HOH A:1914 , HOH A:1922 , HOH A:1963 , HOH A:1982	BINDING SITE FOR RESIDUE SAH A 1804
5	AC5	SOFTWARE	GLU A:1558 , LYS A:1559 , LYS A:1560	BINDING SITE FOR RESIDUE CL A 1805

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:233
                                                                                                                                                                                                                                                                          
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee.hhhhhhhhhhhhhhh.......ee....ee...........hhhhhhhh.........hhhhh........hhhhh............eeeee.....eeeee........eeee...eeehhhhhhhhhhhhhhh......eeeee..eeee...eehhhhhhee.....eeeeeeee..eeeeeeee........eeee.....ee....ee..........ee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4h12 A 1447 PSCVMDDFRDPQRWKECAKQGKMPCYFDLIEENVYLTEMQCECTPLSKDERAQGEIACGEDCLNRLLMIECSSRCPNGDYCSNRRFQRKQHADVEVILTEKKGWGLRAAKDLPSNTFVLEYCGEVLDHKEFKARVKEYARNKNIHYYFMALKNDEIIDATQKGNCSRFMNHSCEPNCETQKWTVNGQLRVGFFTTKLVPSGSELTFDYQFQRYGKEAQKCFCGSANCRGYLGG 1691
                                  1456      1466      1476      1498      1508      1518      1528      1538      1548      1558      1568      1578      1588      1598      1608      1618      1628      1638      1648      1658      1668      1678      1688   
                                                              1484|                                                                                                                                                                                                  
                                                               1497

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (34, 34)

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	4h12
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