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(-) Description

Title :  CRYSTAL STRUCTURE OF YEAST HSH49P IN COMPLEX WITH CUS1P BINDING DOMAIN.
 
Authors :  A. M. Van Roon, E. Obayashi, B. Sposito, C. Oubridge, K. Nagai
Date :  24 Aug 16  (Deposition) - 12 Apr 17  (Release) - 24 May 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym. Unit :  A,B,C,D,F,H
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  F,H  (1x)
Keywords :  Splicing, U2 Snrnp, Sf3B Complex, Rna Binding Domain (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. M. Van Roon, C. Oubridge, E. Obayashi, B. Sposito, A. J. Newman, B. Seraphin, K. Nagai
Crystal Structure Of U2 Snrnp Sf3B Components: Hsh49P In Complex With Cus1P-Binding Domain.
Rna V. 23 968 2017
PubMed-ID: 28348170  |  Reference-DOI: 10.1261/RNA.059378.116

(-) Compounds

Molecule 1 - PROTEIN HSH49
    Chains: A, C, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Gene: HSH49, YOR319W, O6142
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / S288C)
    Organism Taxid: 559292
    Other Details: GGS SEQUENCE AT THE N-TERMINUS IS NON-NATURAL AND LEFT OVER FROM TEV-PROTEASE CLEAVAGE SITE
    Strain: ATCC 204508 / S288C
 
Molecule 2 - COLD SENSITIVE U2 SNRNA SUPPRESSOR 1
    Chains: B, D, H
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Gene: CUS1, YMR240C, YM9408.02C
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / S288C)
    Organism Taxid: 559292
    Other Details: HSH49P BINDING DOMAIN OF CUS1P BETWEEN RESIDUES 290- 368
    Strain: ATCC 204508 / S288C

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDFH
Biological Unit 1 (1x): AB    
Biological Unit 2 (1x):   CD  
Biological Unit 3 (1x):     FH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5LSB)

(-) Sites  (0, 0)

(no "Site" information available for 5LSB)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5LSB)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5LSB)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5LSB)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5LSB)

(-) Exons   (0, 0)

(no "Exon" information available for 5LSB)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:176
                                                                                                                                                                                                                
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee......hhhhhhhhhh....eeeee..ee....ee...eeeee.hhhhhhhhhhhhh...ee..ee.eeee...eeeeee......hhhhhhhhhhh........eeeee..eeeeeeee.hhhhhhhhhhhhh.eee..eeeeeee...........hhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5lsb A   8 GNTVYVGNIDPRITKEQLYELFIQINPVLRIKYPKDKVLQAYQGYAFIEFYNQGDAQYAIKIMNNTVRLYDRLIKVRQVPIAKLFIKNLADSIDSDQLVKIFNKFGKLIREPEIFYLSKLKCAYVYFEDFEKADLAIKSLNNQLVANNRITVDYAFKNGKGNAKYGDDVDRLLNKE 205
                                    17        27        37        47        57        67        77       106       116       126       136       148       158       168       178      |189       199      
                                                                                                         86|                                   144|                                   185|                  
                                                                                                         106                                    147                                    187                  


Chain B from PDB  Type:PROTEIN  Length:62
                                                                                              
               SCOP domains -------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhh........hhhhhhhhh.......eee.....hhhhh.....eee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------- Transcript
                 5lsb B 289 SRPGRISQELRAIMNLPEGQLPPWCMKMKDIGLPTGYPDLKIAGLNWDITNLKGDVYGKIIP 350
                                   298       308       318       328       338       348  


Chain C from PDB  Type:PROTEIN  Length:176
                                                                                                                                                                                                                
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee......hhhhhhhhhh....eeeee..ee....ee...eeeee.hhhhhhhhhhhhh...ee..ee.eeee...eeeeee......hhhhhhhhhhh........eeeee..eeeeeeee.hhhhhhhhhhhhh..ee..ee.eeee...........hhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5lsb C   8 GNTVYVGNIDPRITKEQLYELFIQINPVLRIKYPKDKVLQAYQGYAFIEFYNQGDAQYAIKIMNNTVRLYDRLIKVRQVPIAKLFIKNLADSIDSDQLVKIFNKFGKLIREPEIFYLSKLKCAYVYFEDFEKADLAIKSLNNQLVANNRITVDYAFKNGKGNAKYGDDVDRLLNKE 205
                                    17        27        37        47        57        67        77       106       116       126       136       148       158       168       178      |189       199      
                                                                                                         86|                                   144|                                   185|                  
                                                                                                         106                                    147                                    187                  


Chain D from PDB  Type:PROTEIN  Length:62
                                                                                              
               SCOP domains -------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhh........hhhhhhhhh.......eee.....hhhhh.....eee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------- Transcript
                 5lsb D 289 SRPGRISQELRAIMNLPEGQLPPWCMKMKDIGLPTGYPDLKIAGLNWDITNLKGDVYGKIIP 350
                                   298       308       318       328       338       348  


Chain F from PDB  Type:PROTEIN  Length:174
                                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeee......hhhhhhhhhh....eeeee..ee....ee...eeeee.hhhhhhhhhhhhh...ee..ee.eeee...eeeeee......hhhhhhhhhhh........eeeee..eeeeeeee.hhhhhhhhhhhhh.eee..eeeeeee.....hhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5lsb F   8 GNTVYVGNIDPRITKEQLYELFIQINPVLRIKYPKDKVLQAYQGYAFIEFYNQGDAQYAIKIMNNTVRLYDRLIKVRQVPIAKLFIKNLADSIDSDQLVKIFNKFGKLIREPEIFYLSKLKCAYVYFEDFEKADLAIKSLNNQLVANNRITVDYAFKKGNAKYGDDVDRLLNKE 205
                                    17        27        37        47        57        67        77       106       116       126       136       148       158       168       178      |191       201    
                                                                                                         86|                                   144|                                   185|                
                                                                                                         106                                    147                                    189                


Chain H from PDB  Type:PROTEIN  Length:62
                                                                                              
               SCOP domains -------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhh........hhhhhhhhh.......eee.....hhhhh.....eee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------- Transcript
                 5lsb H 289 SRPGRISQELRAIMNLPEGQLPPWCMKMKDIGLPTGYPDLKIAGLNWDITNLKGDVYGKIIP 350
                                   298       308       318       328       338       348
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5LSB)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5LSB)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5LSB)

(-) Gene Ontology  (14, 21)

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  HSH49_YEAST | Q99181
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 Related Entries

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        CUS1_YEAST | Q02554: 5gm6 5lsl
        HSH49_YEAST | Q99181: 5gm6 5lsl

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