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(-) Description

Title :  CRYSTAL STRUCTURE OF TYR24 PHOSPHORYLATED ANNEXIN A2 AT 3.4 A RESOLUTION
 
Authors :  P. Ecsedi, G. Gogl, B. Kiss, L. Nyitray
Date :  15 Aug 16  (Deposition) - 05 Jul 17  (Release) - 12 Jul 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.40
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Calcium-Binding Protein, Tyrosine Phosphorylation (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. Ecsedi, B. Kiss, G. Gogl, L. Radnai, L. Buday, K. Koprivanacz, K. Liliom, I. Leveles, B. Vertessy, N. Jeszenoi, C. Hetenyi, G. Schlosser, G. Katona, L. Nyitray
Regulation Of The Equilibrium Between Closed And Open Conformations Of Annexin A2 By N-Terminal Phosphorylation And S100A4-Binding.
Structure 2017
PubMed-ID: 28669632  |  Reference-DOI: 10.1016/J.STR.2017.06.001

(-) Compounds

Molecule 1 - ANNEXIN A2
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: ANXA2, ANX2, ANX2L4, CAL1H, LPC2D
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: ANNEXIN II,ANNEXIN-2,CALPACTIN I HEAVY CHAIN,CALPACTIN-1 HEAVY CHAIN,CHROMOBINDIN-8,LIPOCORTIN II,PLACENTAL ANTICOAGULANT PROTEIN IV,PAP-IV,PROTEIN I,P36

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 12)

Asymmetric Unit (2, 12)
No.NameCountTypeFull Name
1CA10Ligand/IonCALCIUM ION
2PTR2Mod. Amino AcidO-PHOSPHOTYROSINE
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2PTR1Mod. Amino AcidO-PHOSPHOTYROSINE
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2PTR1Mod. Amino AcidO-PHOSPHOTYROSINE

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETHR A:123 , GLU A:125 , HOH A:502binding site for residue CA A 401
02AC2SOFTWAREGLY A:202 , ARG A:205 , GLY A:207 , GLU A:247binding site for residue CA A 402
03AC3SOFTWARESER A:234 , MET A:278 , GLY A:280 , GLY A:282 , ASP A:322binding site for residue CA A 403
04AC4SOFTWAREGLY A:50 , GLU A:53binding site for residue CA A 404
05AC5SOFTWARELYS A:88 , LEU A:91 , GLU A:96binding site for residue CA A 405
06AC6SOFTWAREGLY B:50 , VAL B:51 , GLU B:53binding site for residue CA B 401
07AC7SOFTWARELYS B:88 , LEU B:91 , GLU B:96binding site for residue CA B 402
08AC8SOFTWARESER B:234 , MET B:278 , GLY B:280 , GLY B:282 , ASP B:322binding site for residue CA B 403
09AC9SOFTWAREGLY B:202 , ARG B:205 , LYS B:206 , GLY B:207 , GLU B:247binding site for residue CA B 404
10AD1SOFTWARETHR B:123 , GLU B:125binding site for residue CA B 405

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5LQ2)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5LQ2)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5LQ2)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5LQ2)

(-) Exons   (0, 0)

(no "Exon" information available for 5LQ2)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:319
                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............hhhhhhhhhhhhhhh...hhhhhhhhhh..hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhh...hhhhhhhhhhhhhh.hhhhhhhhhh.hhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5lq2 A  21 PSAyGSVKAYTNFDAERDALNIETAIKTKGVDEVTIVNILTNRSNEQRQDIAFAYQRRTKKELASALKSALSGHLETVILGLLKTPAQYDASELKASMKGLGTDEDSLIEIICSRTNQELQEINRVYKEMYKTDLEKDIISDTSGDFRKLMVALAKGRRAEDGSVIDYELIDQDARDLYDAGVKRKGTDVPKWISIMTERSVPHLQKVFDRYKSYSPYDMLESIRKEVKGDLENAFLNLVQCIQNKPLYFADRLYDSMKGKGTRDKVLIRIMVSRSEVDMLKIRSEFKRKYGKSLYYYIQQDTKGDYQKALLYLCGGDD 339
                               |    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330         
                               |                                                                                                                                                                                                                                                                                                                           
                              24-PTR                                                                                                                                                                                                                                                                                                                       


Chain B from PDB  Type:PROTEIN  Length:319
                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............hhhhhhhhhhhhh....hhhhhhhhhh..hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhh...hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5lq2 B  21 PSAyGSVKAYTNFDAERDALNIETAIKTKGVDEVTIVNILTNRSNEQRQDIAFAYQRRTKKELASALKSALSGHLETVILGLLKTPAQYDASELKASMKGLGTDEDSLIEIICSRTNQELQEINRVYKEMYKTDLEKDIISDTSGDFRKLMVALAKGRRAEDGSVIDYELIDQDARDLYDAGVKRKGTDVPKWISIMTERSVPHLQKVFDRYKSYSPYDMLESIRKEVKGDLENAFLNLVQCIQNKPLYFADRLYDSMKGKGTRDKVLIRIMVSRSEVDMLKIRSEFKRKYGKSLYYYIQQDTKGDYQKALLYLCGGDD 339
                               |    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330         
                              24-PTR
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5LQ2)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5LQ2)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5LQ2)

(-) Gene Ontology  (64, 64)

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UniProtKB/Swiss-Prot
        ANXA2_HUMAN | P07355: 1w7b 1xjl 2hyu 2hyv 2hyw 4drw 4ftg 4hrh 5lpu 5lpx 5lq0

(-) Related Entries Specified in the PDB File

5lpu