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(-) Description

Title :  HUMAN BUTYRYLCHOLINESTERASE COMPLEXED WITH N-PROPARGYLIPERIDINES
 
Authors :  N. Coquelle, D. Knez, J. P. Colletier, S. Gobec
Date :  23 Jul 16  (Deposition) - 14 Dec 16  (Release) - 11 Jan 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.52
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Alzheimer Disease Ad Butyrylcholinesterase N-Propargyliperidines, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  U. Kosak, D. Knez, N. Coquelle, B. Brus, A. Pislar, F. Nachon, X. Brazzolotto, J. Kos, J. P. Colletier, S. Gobec
N-Propargylpiperidines With Naphthalene-2-Carboxamide Or Naphthalene-2-Sulfonamide Moieties: Potential Multifunctional Anti-Alzheimer'S Agents.
Bioorg. Med. Chem. V. 25 633 2017
PubMed-ID: 27908752  |  Reference-DOI: 10.1016/J.BMC.2016.11.032

(-) Compounds

Molecule 1 - CHOLINESTERASE
    Chains: A, B
    EC Number: 3.1.1.8
    Engineered: YES
    Expression System: CRICETULUS GRISEUS
    Expression System Common: CHINESE HAMSTER
    Expression System Taxid: 10029
    Gene: BCHE, CHE1
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: ACYLCHOLINE ACYLHYDROLASE,BUTYRYLCHOLINE ESTERASE,CHOLINE ESTERASE II,PSEUDOCHOLINESTERASE

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (6, 31)

Asymmetric Unit (6, 31)
No.NameCountTypeFull Name
16YC2Ligand/Ion~{N}-(2-METHOXYETHYL)-~{N}-[[(3~{S})-1-PROP-2-YNYLPIPERIDIN-3-YL]METHYL]NAPHTHALENE-2-CARBOXAMIDE
2FUC1Ligand/IonALPHA-L-FUCOSE
3FUL2Ligand/IonBETA-L-FUCOSE
4GOL3Ligand/IonGLYCEROL
5NAG22Ligand/IonN-ACETYL-D-GLUCOSAMINE
6PEG1Ligand/IonDI(HYDROXYETHYL)ETHER
Biological Unit 1 (6, 18)
No.NameCountTypeFull Name
16YC1Ligand/Ion~{N}-(2-METHOXYETHYL)-~{N}-[[(3~{S})-1-PROP-2-YNYLPIPERIDIN-3-YL]METHYL]NAPHTHALENE-2-CARBOXAMIDE
2FUC1Ligand/IonALPHA-L-FUCOSE
3FUL1Ligand/IonBETA-L-FUCOSE
4GOL2Ligand/IonGLYCEROL
5NAG12Ligand/IonN-ACETYL-D-GLUCOSAMINE
6PEG1Ligand/IonDI(HYDROXYETHYL)ETHER
Biological Unit 2 (4, 13)
No.NameCountTypeFull Name
16YC1Ligand/Ion~{N}-(2-METHOXYETHYL)-~{N}-[[(3~{S})-1-PROP-2-YNYLPIPERIDIN-3-YL]METHYL]NAPHTHALENE-2-CARBOXAMIDE
2FUC-1Ligand/IonALPHA-L-FUCOSE
3FUL1Ligand/IonBETA-L-FUCOSE
4GOL1Ligand/IonGLYCEROL
5NAG10Ligand/IonN-ACETYL-D-GLUCOSAMINE
6PEG-1Ligand/IonDI(HYDROXYETHYL)ETHER

(-) Sites  (23, 23)

Asymmetric Unit (23, 23)
No.NameEvidenceResiduesDescription
01AC1SOFTWARENAG A:603binding site for residue FUL A 604
02AC2SOFTWAREASN A:228 , TRP A:522 , THR A:523binding site for residue GOL A 615
03AC3SOFTWAREGLY A:117 , THR A:120 , SER A:198 , HOH A:701binding site for residue 6YC A 616
04AC4SOFTWAREASN A:455 , PEG A:618binding site for residue GOL A 617
05AC5SOFTWAREGOL A:617binding site for residue PEG A 618
06AC6SOFTWAREGLN B:380 , NAG B:604 , HOH B:714binding site for residue NAG B 606
07AC7SOFTWARELEU B:18 , TYR B:61 , TRP B:98 , ASP B:129 , LYS B:131binding site for residue GOL B 610
08AC8SOFTWAREASN B:68 , ASP B:70 , GLY B:117 , THR B:120 , SER B:198 , TRP B:231binding site for residue 6YC B 611
09AC9SOFTWARETYR A:237 , NAG A:607 , ASN B:455binding site for residue NAG B 612
10AD1SOFTWAREASN A:17 , THR A:24binding site for Mono-Saccharide NAG A 601 bound to ASN A 17
11AD2SOFTWAREILE A:55 , ASN A:57 , FUL A:604binding site for Poly-Saccharide residues NAG A 602 through NAG A 603 bound to ASN A 57
12AD3SOFTWAREASN A:106 , ASN A:188 , LYS A:190binding site for Poly-Saccharide residues NAG A 605 through NAG A 606 bound to ASN A 106
13AD4SOFTWARESER A:53 , ASN A:241 , ASN A:245 , PHE A:278 , NAG B:612binding site for Poly-Saccharide residues NAG A 607 through FUC A 608 bound to ASN A 241
14AD5SOFTWAREPRO A:335 , GLY A:336 , SER A:338 , ASN A:341binding site for Poly-Saccharide residues NAG A 609 through NAG A 610 bound to ASN A 341
15AD6SOFTWARETYR A:477 , ASN A:481 , GLU A:482 , GLN A:484 , LEU B:88 , GLN B:270binding site for Poly-Saccharide residues NAG A 611 through NAG A 612 bound to ASN A 481
16AD7SOFTWAREASN A:486 , HOH A:702 , HOH B:708binding site for Poly-Saccharide residues NAG A 613 through NAG A 614 bound to ASN A 486
17AD8SOFTWAREASN B:17 , ALA B:101binding site for Mono-Saccharide NAG B 613 bound to ASN B 17
18AD9SOFTWAREASN B:57binding site for Mono-Saccharide NAG B 601 bound to ASN B 57
19AE1SOFTWAREASN B:106 , ASN B:188binding site for Poly-Saccharide residues NAG B 602 through NAG B 603 bound to ASN B 106
20AE2SOFTWARETYR B:237 , ASN B:241 , ASN B:245 , PHE B:278 , NAG B:606binding site for Poly-Saccharide residues NAG B 604 through FUL B 605 bound to ASN B 241
21AE3SOFTWAREASN B:256 , GLU B:259 , HOH B:701 , HOH B:716binding site for Mono-Saccharide NAG B 607 bound to ASN B 256
22AE4SOFTWARESER B:338 , ASN B:341 , HOH B:706binding site for Mono-Saccharide NAG B 608 bound to ASN B 341
23AE5SOFTWARETYR B:477 , ASN B:481 , GLU B:482 , THR B:483binding site for Mono-Saccharide NAG B 609 bound to ASN B 481

(-) SS Bonds  (6, 6)

Asymmetric Unit
No.Residues
1A:65 -A:92
2A:252 -A:263
3A:400 -A:519
4B:65 -B:92
5B:252 -B:263
6B:400 -B:519

(-) Cis Peptide Bonds  (3, 3)

Asymmetric Unit
No.Residues
1Ala A:101 -Pro A:102
2Gln A:380 -Arg A:381
3Ala B:101 -Pro B:102

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5LKR)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5LKR)

(-) Exons   (0, 0)

(no "Exon" information available for 5LKR)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:528
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeee..eeee.eeeee..eeeeeeeeee......................eee......ee..........hhhhhh......ee....eeeeeee......eeeeeee...........hhhhhhhhhhhhhh.eeeee....hhhhhh..........hhhhhhhhhhhhhhhhhhhhh.eeeeeeeeeeehhhhhhhhhhh..........eeeee...........hhhhhhhhhhhhhhhh.....hhhhhhhhhh..hhhhhhhhhhhh......................hhhhhhhh.......eeeeee...hhhhhh..............hhhhhhhhhhhhh...hhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeeee.........hhhhh.....hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh....................eeeee......eee..hhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5lkr A   3 DIIIATKNGKVRGMNLTVFGGTVTAFLGIPYAQPPLGRLRFKKPQSLTKWSDIWNATKYANSCCQNIDQSFPGFHGSEMWNPNTDLSEDCLYLNVWIPAPKPKNATVLIWIYGGGFQTGTSSLHVYDGKFLARVERVIVVSMNYRVGALGFLALPGNPEAPGNMGLFDQQLALQWVQKNIAAFGGNPKSVTLFGESAGAASVSLHLLSPGSHSLFTRAILQSGSFNAPWAVTSLYEARNRTLNLAKLTGCSRENETEIIKCLRNKDPQEILLNEAFVVPYGTPLSVNFGPTVDGDFLTDMPDILLELGQFKKTQILVGVNKDEGTAFLVYGAPGFSKDNNSIITRKEFQEGLKIFFPGVSEFGKESILFHYTDWVDDQRPENYREALGDVVGDYNFICPALEFTKKFSEWGNNAFFYYFEHRSSKLPWPEWMGVMHGYEIEFVFGLPLERRDNYTKAEEILSRSIVKRWANFAKYGNPNETQNNSTSWPVFKSTEQKYLTLNTESTRIMTKLRAQQCRFWTSFFPKVL 530
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522        


Chain B from PDB  Type:PROTEIN  Length:525
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee..eeee.eeeee..eeeeeeeeee.....hhhhh............eee..................hhhhhh............eeeeeeee.....eeeeeee...........hhhhhhhhhhhhhh.eeeee....hhhhhh..........hhhhhhhhhhhhhhhhhhhhh.eeeeeeeeeeehhhhhhhhhhhhhhhhhhhh.eeeee...........hhhhhhhhhhhhhhhh.....hhhhhhhhhh..hhhhhhhhhhhh......................hhhhhhhh.......eeeeee...hhhhhhhh............hhhhhhhhhhhhh...hhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeeee.........hhhhh.....hhhhhh..........hhhhhhhhhhhhhhhhhhhhh...................eeeee......eee..hhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5lkr B   4 IIIATKNGKVRGMNLTVFGGTVTAFLGIPYAQPPLGRLRFKKPQSLTKWSDIWNATKYANSCCQNIDQSFPGFHGSEMWNPNTDLSEDCLYLNVWIPAPKPKNATVLIWIYGGGFQTGTSSLHVYDGKFLARVERVIVVSMNYRVGALGFLALPGNPEAPGNMGLFDQQLALQWVQKNIAAFGGNPKSVTLFGESAGAASVSLHLLSPGSHSLFTRAILQSGSFNAPWAVTSLYEARNRTLNLAKLTGCSRENETEIIKCLRNKDPQEILLNEAFVVPYGTPLSVNFGPTVDGDFLTDMPDILLELGQFKKTQILVGVNKDEGTAFLVYGAPGFSKDNNSIITRKEFQEGLKIFFPGVSEFGKESILFHYTDWVDDQRPENYREALGDVVGDYNFICPALEFTKKFSEWGNNAFFYYFEHRSSKLPWPEWMGVMHGYEIEFVFGLPLERRDNYTKAEEILSRSIVKRWANFAKYGNPNETQSTSWPVFKSTEQKYLTLNTESTRIMTKLRAQQCRFWTSFFPKVL 530
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483||     495       505       515       525     
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          484|                                           
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           487
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5LKR)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5LKR)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5LKR)

(-) Gene Ontology  (28, 28)

Asymmetric Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Ala A:101 - Pro A:102   [ RasMol ]  
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  5lkr
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  CHLE_HUMAN | P06276
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  3.1.1.8
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CHLE_HUMAN | P06276: 1eho 1ehq 1kcj 1p0i 1p0m 1p0p 1p0q 1xlu 1xlv 1xlw 2j4c 2pm8 2wid 2wif 2wig 2wij 2wik 2wil 2wsl 2xmb 2xmc 2xmd 2xmg 2xqf 2xqg 2xqi 2xqj 2xqk 2y1k 3djy 3dkk 3o9m 4aqd 4axb 4b0o 4b0p 4bbz 4bds 4tpk 4xii 5dyt 5dyw 5dyy 5k5e

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