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5LKR
Asym. Unit
Info
Asym.Unit (190 KB)
Biol.Unit 1 (94 KB)
Biol.Unit 2 (92 KB)
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(1)
Title
:
HUMAN BUTYRYLCHOLINESTERASE COMPLEXED WITH N-PROPARGYLIPERIDINES
Authors
:
N. Coquelle, D. Knez, J. P. Colletier, S. Gobec
Date
:
23 Jul 16 (Deposition) - 14 Dec 16 (Release) - 11 Jan 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.52
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Alzheimer Disease Ad Butyrylcholinesterase N-Propargyliperidines, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
U. Kosak, D. Knez, N. Coquelle, B. Brus, A. Pislar, F. Nachon, X. Brazzolotto, J. Kos, J. P. Colletier, S. Gobec
N-Propargylpiperidines With Naphthalene-2-Carboxamide Or Naphthalene-2-Sulfonamide Moieties: Potential Multifunctional Anti-Alzheimer'S Agents.
Bioorg. Med. Chem. V. 25 633 2017
[
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Hetero Components
(6, 31)
Info
All Hetero Components
1a: ~{N}-(2-METHOXYETHYL)-~{N}-[[(3~{S... (6YCa)
1b: ~{N}-(2-METHOXYETHYL)-~{N}-[[(3~{S... (6YCb)
2a: ALPHA-L-FUCOSE (FUCa)
3a: BETA-L-FUCOSE (FULa)
3b: BETA-L-FUCOSE (FULb)
4a: GLYCEROL (GOLa)
4b: GLYCEROL (GOLb)
4c: GLYCEROL (GOLc)
5a: N-ACETYL-D-GLUCOSAMINE (NAGa)
5b: N-ACETYL-D-GLUCOSAMINE (NAGb)
5c: N-ACETYL-D-GLUCOSAMINE (NAGc)
5d: N-ACETYL-D-GLUCOSAMINE (NAGd)
5e: N-ACETYL-D-GLUCOSAMINE (NAGe)
5f: N-ACETYL-D-GLUCOSAMINE (NAGf)
5g: N-ACETYL-D-GLUCOSAMINE (NAGg)
5h: N-ACETYL-D-GLUCOSAMINE (NAGh)
5i: N-ACETYL-D-GLUCOSAMINE (NAGi)
5j: N-ACETYL-D-GLUCOSAMINE (NAGj)
5k: N-ACETYL-D-GLUCOSAMINE (NAGk)
5l: N-ACETYL-D-GLUCOSAMINE (NAGl)
5m: N-ACETYL-D-GLUCOSAMINE (NAGm)
5n: N-ACETYL-D-GLUCOSAMINE (NAGn)
5o: N-ACETYL-D-GLUCOSAMINE (NAGo)
5p: N-ACETYL-D-GLUCOSAMINE (NAGp)
5q: N-ACETYL-D-GLUCOSAMINE (NAGq)
5r: N-ACETYL-D-GLUCOSAMINE (NAGr)
5s: N-ACETYL-D-GLUCOSAMINE (NAGs)
5t: N-ACETYL-D-GLUCOSAMINE (NAGt)
5u: N-ACETYL-D-GLUCOSAMINE (NAGu)
5v: N-ACETYL-D-GLUCOSAMINE (NAGv)
6a: DI(HYDROXYETHYL)ETHER (PEGa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
6YC
2
Ligand/Ion
~{N}-(2-METHOXYETHYL)-~{N}-[[(3~{S})-1-PROP-2-YNYLPIPERIDIN-3-YL]METHYL]NAPHTHALENE-2-CARBOXAMIDE
2
FUC
1
Ligand/Ion
ALPHA-L-FUCOSE
3
FUL
2
Ligand/Ion
BETA-L-FUCOSE
4
GOL
3
Ligand/Ion
GLYCEROL
5
NAG
22
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
6
PEG
1
Ligand/Ion
DI(HYDROXYETHYL)ETHER
[
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Sites
(23, 23)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
NAG A:603
binding site for residue FUL A 604
02
AC2
SOFTWARE
ASN A:228 , TRP A:522 , THR A:523
binding site for residue GOL A 615
03
AC3
SOFTWARE
GLY A:117 , THR A:120 , SER A:198 , HOH A:701
binding site for residue 6YC A 616
04
AC4
SOFTWARE
ASN A:455 , PEG A:618
binding site for residue GOL A 617
05
AC5
SOFTWARE
GOL A:617
binding site for residue PEG A 618
06
AC6
SOFTWARE
GLN B:380 , NAG B:604 , HOH B:714
binding site for residue NAG B 606
07
AC7
SOFTWARE
LEU B:18 , TYR B:61 , TRP B:98 , ASP B:129 , LYS B:131
binding site for residue GOL B 610
08
AC8
SOFTWARE
ASN B:68 , ASP B:70 , GLY B:117 , THR B:120 , SER B:198 , TRP B:231
binding site for residue 6YC B 611
09
AC9
SOFTWARE
TYR A:237 , NAG A:607 , ASN B:455
binding site for residue NAG B 612
10
AD1
SOFTWARE
ASN A:17 , THR A:24
binding site for Mono-Saccharide NAG A 601 bound to ASN A 17
11
AD2
SOFTWARE
ILE A:55 , ASN A:57 , FUL A:604
binding site for Poly-Saccharide residues NAG A 602 through NAG A 603 bound to ASN A 57
12
AD3
SOFTWARE
ASN A:106 , ASN A:188 , LYS A:190
binding site for Poly-Saccharide residues NAG A 605 through NAG A 606 bound to ASN A 106
13
AD4
SOFTWARE
SER A:53 , ASN A:241 , ASN A:245 , PHE A:278 , NAG B:612
binding site for Poly-Saccharide residues NAG A 607 through FUC A 608 bound to ASN A 241
14
AD5
SOFTWARE
PRO A:335 , GLY A:336 , SER A:338 , ASN A:341
binding site for Poly-Saccharide residues NAG A 609 through NAG A 610 bound to ASN A 341
15
AD6
SOFTWARE
TYR A:477 , ASN A:481 , GLU A:482 , GLN A:484 , LEU B:88 , GLN B:270
binding site for Poly-Saccharide residues NAG A 611 through NAG A 612 bound to ASN A 481
16
AD7
SOFTWARE
ASN A:486 , HOH A:702 , HOH B:708
binding site for Poly-Saccharide residues NAG A 613 through NAG A 614 bound to ASN A 486
17
AD8
SOFTWARE
ASN B:17 , ALA B:101
binding site for Mono-Saccharide NAG B 613 bound to ASN B 17
18
AD9
SOFTWARE
ASN B:57
binding site for Mono-Saccharide NAG B 601 bound to ASN B 57
19
AE1
SOFTWARE
ASN B:106 , ASN B:188
binding site for Poly-Saccharide residues NAG B 602 through NAG B 603 bound to ASN B 106
20
AE2
SOFTWARE
TYR B:237 , ASN B:241 , ASN B:245 , PHE B:278 , NAG B:606
binding site for Poly-Saccharide residues NAG B 604 through FUL B 605 bound to ASN B 241
21
AE3
SOFTWARE
ASN B:256 , GLU B:259 , HOH B:701 , HOH B:716
binding site for Mono-Saccharide NAG B 607 bound to ASN B 256
22
AE4
SOFTWARE
SER B:338 , ASN B:341 , HOH B:706
binding site for Mono-Saccharide NAG B 608 bound to ASN B 341
23
AE5
SOFTWARE
TYR B:477 , ASN B:481 , GLU B:482 , THR B:483
binding site for Mono-Saccharide NAG B 609 bound to ASN B 481
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
(0, 0)
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Pfam Domains
(0, 0)
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Sorry, no Info available
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Asymmetric Unit 1
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select chains 'A' and 'C'
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
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show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
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Asym.Unit (190 KB)
Header - Asym.Unit
Biol.Unit 1 (94 KB)
Header - Biol.Unit 1
Biol.Unit 2 (92 KB)
Header - Biol.Unit 2
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