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(-) Description

Title :  STRUCTURE OF A NUCLEOTIDE-BOUND FORM OF PKCIOTA CORE KINASE DOMAIN
 
Authors :  M. E. Ivanova, A. G. Purkiss, N. Q. Mcdonald
Date :  14 Jul 16  (Deposition) - 14 Sep 16  (Release) - 14 Sep 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.79
Chains :  Asym./Biol. Unit :  A
Keywords :  Apkc, Polarity, Complex, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. V. Soriano, M. E. Ivanova, G. Fletcher, P. Riou, P. P. Knowles, K. Barnouin, A. Purkiss, B. Kostelecky, P. Saiu, M. Linch, A. Elbediwy S. Kjr, N. O'Reilly, A. P. Snijders, P. J. Parker, B. J. Thompson, N. Q. Mcdonald
Apkc Inhibition By Par3 Cr3 Flanking Regions Controls Substrate Access And Underpins Apical-Junctional Polarization.
Dev. Cell V. 38 384 2016
PubMed-ID: 27554858  |  Reference-DOI: 10.1016/J.DEVCEL.2016.07.018

(-) Compounds

Molecule 1 - PROTEIN KINASE C IOTA TYPE
    Chains: A
    EC Number: 2.7.11.13
    Engineered: YES
    Expression System: UNIDENTIFIED BACULOVIRUS
    Expression System Taxid: 10469
    Gene: PRKCI, DXS1179E
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: ATYPICAL PROTEIN KINASE C-LAMBDA/IOTA,APKC-LAMBDA/IOTA,NPKC- IOTA

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (7, 17)

Asymmetric/Biological Unit (7, 17)
No.NameCountTypeFull Name
1ACP1Ligand/IonPHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER
2ACT2Ligand/IonACETATE ION
3FMT7Ligand/IonFORMIC ACID
4IMD1Ligand/IonIMIDAZOLE
5MRD1Ligand/Ion(4R)-2-METHYLPENTANE-2,4-DIOL
6PEG3Ligand/IonDI(HYDROXYETHYL)ETHER
7TPO2Mod. Amino AcidPHOSPHOTHREONINE

(-) Sites  (14, 14)

Asymmetric Unit (14, 14)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREILE A:260 , GLY A:261 , ARG A:262 , GLY A:263 , SER A:264 , TYR A:265 , ALA A:266 , VAL A:268 , ALA A:281 , LYS A:283 , ILE A:332 , GLU A:333 , VAL A:335 , ASP A:396 , PHE A:552 , HOH A:718 , HOH A:724 , HOH A:729 , HOH A:739 , HOH A:795 , HOH A:816binding site for residue ACP A 601
02AC2SOFTWAREASN A:291 , SER A:486 , VAL A:487 , LYS A:488 , HOH A:722binding site for residue FMT A 602
03AC3SOFTWAREARG A:377 , ASP A:378 , LEU A:379 , GLY A:415 , THR A:416 , TYR A:419binding site for residue FMT A 603
04AC4SOFTWAREGLU A:325 , VAL A:571 , ARG A:572 , ILE A:574 , GLN A:576binding site for residue FMT A 604
05AC5SOFTWAREARG A:426 , ARG A:483 , SER A:484 , LEU A:485 , LYS A:573binding site for residue FMT A 605
06AC6SOFTWARELYS A:303 , HIS A:304 , VAL A:536 , HOH A:744 , HOH A:909binding site for residue FMT A 606
07AC7SOFTWARESER A:495 , ASN A:498 , GLU A:503 , LEU A:505binding site for residue FMT A 607
08AC8SOFTWARETPO A:412 , HOH A:710 , HOH A:923binding site for residue IMD A 609
09AC9SOFTWARELEU A:381 , GLU A:445 , GLY A:449binding site for residue MRD A 610
10AD1SOFTWAREMET A:341 , LYS A:380 , LEU A:381 , ASP A:382 , ASN A:418 , TYR A:419 , GLU A:445 , SER A:451binding site for residue PEG A 611
11AD2SOFTWAREARG A:272 , ASP A:277 , ILE A:279 , PRO A:406 , GLN A:510 , PHE A:547binding site for residue PEG A 612
12AD3SOFTWARESER A:264 , GLU A:288 , LEU A:289 , SER A:491 , GLY A:518 , HIS A:519 , PRO A:520 , HOH A:707 , HOH A:725 , HOH A:827binding site for residue PEG A 613
13AD4SOFTWARETYR A:280 , GLY A:317 , LEU A:318 , ASN A:586 , HOH A:713 , HOH A:799binding site for residue ACT A 614
14AD5SOFTWAREVAL A:299 , GLN A:300 , GLU A:578 , PHE A:582binding site for residue ACT A 615

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5LI9)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5LI9)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5LI9)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5LI9)

(-) Exons   (0, 0)

(no "Exon" information available for 5LI9)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:331
                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhh.eeeeeeeee...eeeeeeee.....eeeeeeee.hhh.hhhhhhhhhhhhhhhhhhh.......eeeeee...eeeeee......hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee.....eee.....................hhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh.....hhhhhhhhhhh........hhhhhhhhhhhh.............hhhhhhhhhhhhh..hhhhhhh....................hhhhhh........hhhhhhhhhhhhhh...ee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5li9 A 247 FSLGLQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQRQRKLPEEHARFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDTTStFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFTEDYLFQVILEKQIRIPRSLSVKAASVLKSFLNKDPKERLGCHPQTGFADIQGHPFFRNVDWDMMEQKQVVPPFKPNISGEFGLDNFDSQFTNEPVQLtPDDDDIVRKIDQSEFEGFEYINPLL 589
                                   256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406     | 416       426       436       446      |468       478       488       498       508       518       528       538       548       558     | 568       578       588 
                                                                                                                                                                                               412-TPO                                  453|                                                                                               564-TPO                     
                                                                                                                                                                                                                                         466
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5LI9)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5LI9)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5LI9)

(-) Gene Ontology  (57, 57)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

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UniProtKB/Swiss-Prot
        KPCI_HUMAN | P41743: 1vd2 1wmh 1zrz 3a8w 3a8x 3zh8 5li1 5lih

(-) Related Entries Specified in the PDB File

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