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(-) Description

Title :  XYLOOLIGOSACCHARIDE OXIDASE FROM MYCELIOPHTHORA THERMOPHILA C1 IN COMPLEX WITH XYLOBIOSE
 
Authors :  H. J. Rozeboom, A. R. Ferrari, M. W. Fraaije
Date :  30 May 16  (Deposition) - 21 Sep 16  (Release) - 16 Nov 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym./Biol. Unit :  A
Keywords :  Fad, Cazy, Oligosaccharide, Xylose, Xylan, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. R. Ferrari, H. J. Rozeboom, J. M. Dobruchowska, S. S. Van Leeuwen, A. S. Vugts, M. J. Koetsier, J. Visser, M. W. Fraaije
Discovery Of A Xylooligosaccharide Oxidase From Myceliophthora Thermophila C1.
J. Biol. Chem. V. 291 23709 2016
PubMed-ID: 27629413  |  Reference-DOI: 10.1074/JBC.M116.741173

(-) Compounds

Molecule 1 - FAD LINKED OXIDASE-LIKE PROTEIN
    Atcc: 42464
    Chains: A
    EC Number: 1.1.3.-
    Engineered: YES
    Expression System: MYCELIOPHTHORA THERMOPHILA ATCC 42464
    Expression System Taxid: 573729
    Gene: MYCTH_102971
    Organism Scientific: MYCELIOPHTHORA THERMOPHILA (STRAIN ATCC 42464 / BCRC 31852 / DSM 1799)
    Organism Taxid: 573729
    Other Details: FIRST 16 RESIDUES ARE A SIGNAL SEQUENCE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 13)

Asymmetric/Biological Unit (4, 13)
No.NameCountTypeFull Name
1BXP4Ligand/Ion4-O-BETA-D-XYLOPYRANOSYL-BETA-D-XYLOPYRANOSE
2FAD1Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
3NAG7Ligand/IonN-ACETYL-D-GLUCOSAMINE
4PEG1Ligand/IonDI(HYDROXYETHYL)ETHER

(-) Sites  (11, 11)

Asymmetric Unit (11, 11)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREPHE A:53 , PRO A:89 , LYS A:90 , SER A:91 , GLY A:92 , GLY A:93 , HIS A:94 , SER A:95 , LEU A:112 , GLY A:153 , THR A:154 , CYS A:155 , VAL A:158 , GLY A:159 , GLY A:161 , GLY A:162 , HIS A:163 , LEU A:165 , HIS A:166 , GLY A:168 , PHE A:169 , GLY A:214 , SER A:215 , GLY A:218 , ILE A:219 , VAL A:220 , TYR A:448 , ASN A:450 , TYR A:451 , BXP A:509 , HOH A:617 , HOH A:647 , HOH A:698 , HOH A:731 , HOH A:751 , HOH A:820binding site for residue FAD A 501
02AC2SOFTWARETHR A:154 , ARG A:272 , ASP A:355 , TYR A:376 , GLU A:412 , TYR A:451 , FAD A:501 , HOH A:602 , HOH A:617 , HOH A:701 , HOH A:755binding site for residue BXP A 509
03AC3SOFTWAREALA A:25 , ASP A:28 , GLU A:29 , ARG A:41 , TRP A:259 , ASN A:262 , GLY A:264 , HOH A:741 , HOH A:744 , HOH A:772 , HOH A:779 , HOH A:910 , HOH A:922binding site for residue BXP A 510
04AC4SOFTWAREARG A:56 , PHE A:426 , ASP A:430 , PRO A:454 , GLY A:455 , BXP A:512 , HOH A:621 , HOH A:635 , HOH A:646 , HOH A:655 , HOH A:721 , HOH A:810 , HOH A:869 , HOH A:872 , HOH A:908binding site for residue BXP A 511
05AC5SOFTWARELYS A:86 , GLU A:104 , ARG A:458 , GLU A:484 , BXP A:511 , HOH A:603 , HOH A:646 , HOH A:869binding site for residue BXP A 512
06AC6SOFTWAREGLU A:238 , GLN A:281 , GLN A:283 , HIS A:322 , TYR A:325 , ARG A:359 , HOH A:657binding site for residue PEG A 513
07AC7SOFTWARELYS A:35 , ARG A:114 , ASN A:117 , GLN A:130 , HOH A:678 , HOH A:792 , HOH A:887binding site for Poly-Saccharide residues NAG A 502 through NAG A 503 bound to ASN A 117
08AC8SOFTWAREASN A:192 , SER A:194 , THR A:201 , GLU A:202 , ASN A:203 , GLN A:479 , HOH A:633 , HOH A:639 , HOH A:759 , HOH A:860 , HOH A:894binding site for Poly-Saccharide residues NAG A 504 through NAG A 505 bound to ASN A 192
09AC9SOFTWAREPRO A:232 , ASN A:233 , GLU A:313binding site for Mono-Saccharide NAG A 506 bound to ASN A 233
10AD1SOFTWAREASN A:245 , SER A:247 , ASN A:248 , HOH A:604binding site for Mono-Saccharide NAG A 507 bound to ASN A 245
11AD2SOFTWAREASN A:289 , HOH A:605 , HOH A:819binding site for Mono-Saccharide NAG A 508 bound to ASN A 289

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:30 -A:79

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5L6F)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5L6F)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5L6F)

(-) Exons   (0, 0)

(no "Exon" information available for 5L6F)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:473
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhh...ee....hhhhhhhh...........eee...hhhhhhhhhhhhhhhh..eeee.......hhhhh.....eeee......eee......eee....hhhhhhhhhhhhhhee.........hhhhhhhh.....hhhhhhhhhh.eeeeeee.....eeeee...hhhhhhhhhhhhhhh.eeeeeee..ee....eeeeeee....hhhhhhhhhhhhhhhhhh......eeeeeee....eeeeeee..hhhhhhhhhhhhhhhhh..eeeeeeehhhhhhhhh.................eeeeeeeee...hhhhhhhhhhhhhhhhhhh..eeeeeeee......hhhhh................eeeeeeeee........hhhhhhhhhhhhhhhhhh.ee.hhhhh....hhhhhhhhhhh.hhhhhhhhhhhhh................ Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5l6f A  25 AAIDECLKNAKVPVTARNSTEWKTDASPFNDRLPYTPAAIAKPATVEHIQAAVLCAAEVGVKANPKSGGHSYASFGLGGEDGHLVVELDRMYNVTLDPETHIATVQPGARLGHIATVLYEEGKRAFSHGTCPGVGVGGHSLHGGFGFSSHSHGLAVDWITSADVVLANGSLVTASETENPDLFWALRGAGSNFGIVASFRFKTFAAPPNVTSYEINLPWTNSSNVVKGWGALQEWLLNGGMPEEMNMRVLGNAFQTQLQGLYHGNASALKTAIQPLLALLDANLSSVQEHDWMEGFRHYAYSGEIDITDPGYDQSETFYSKSLVTSALPPDVLERVAEYWIETANKVRRSWYIIIDMYGGPNSAVTRVPPGAGSYAFRDPERHLFLYELYDRSFGPYPDDGFAFLDGWVHAFTGGLDSSDWGMYINYADPGLDRAEAQEVYYRQNLDRLRRIKQQLDPTELFYYPQAVEPAEV 497
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5L6F)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5L6F)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5L6F)

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)

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        G2QG48_MYCTT | G2QG48: 5k8e 5l6g

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