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(-) Description

Title :  XYLOOLIGOSACCHARIDE OXIDASE FROM MYCELIOPHTHORA THERMOPHILA C1
 
Authors :  H. J. Rozeboom, A. R. Ferrari, M. W. Fraaije
Date :  30 May 16  (Deposition) - 21 Sep 16  (Release) - 16 Nov 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.93
Chains :  Asym./Biol. Unit :  A
Keywords :  Fad, Cazy, Oligosaccharide, Xylose, Xylan, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. R. Ferrari, H. J. Rozeboom, J. M. Dobruchowska, S. S. Van Leeuwen, A. S. Vugts, M. J. Koetsier, J. Visser, M. W. Fraaije
Discovery Of A Xylooligosaccharide Oxidase From Myceliophthora Thermophila C1.
J. Biol. Chem. V. 291 23709 2016
PubMed-ID: 27629413  |  Reference-DOI: 10.1074/JBC.M116.741173

(-) Compounds

Molecule 1 - FAD LINKED OXIDASE-LIKE PROTEIN
    Atcc: 42464
    Chains: A
    EC Number: 1.1.3.-
    Engineered: YES
    Expression System: MYCELIOPHTHORA THERMOPHILA ATCC 42464
    Expression System Taxid: 573729
    Gene: MYCTH_102971
    Organism Scientific: MYCELIOPHTHORA THERMOPHILA (STRAIN ATCC 42464 / BCRC 31852 / DSM 1799)
    Organism Taxid: 573729
    Other Details: FIRST 16 RESIDUES ARE A SIGNAL SEQUENCE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 12)

Asymmetric/Biological Unit (4, 12)
No.NameCountTypeFull Name
1FAD1Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
2GOL3Ligand/IonGLYCEROL
3MES1Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
4NAG7Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREPHE A:53 , PRO A:89 , LYS A:90 , SER A:91 , GLY A:92 , GLY A:93 , HIS A:94 , SER A:95 , TYR A:96 , LEU A:112 , PRO A:131 , GLY A:153 , THR A:154 , CYS A:155 , VAL A:158 , GLY A:159 , GLY A:161 , GLY A:162 , HIS A:163 , LEU A:165 , HIS A:166 , GLY A:168 , PHE A:169 , GLY A:214 , SER A:215 , GLY A:218 , VAL A:220 , TYR A:448 , ASN A:450 , TYR A:451 , HOH A:636 , HOH A:696 , HOH A:729 , HOH A:748 , HOH A:762binding site for residue FAD A 501
02AC2SOFTWAREARG A:272 , ASN A:276 , TYR A:325 , PRO A:353 , PRO A:354 , ASP A:355 , TYR A:376 , HOH A:608 , HOH A:811 , HOH A:865binding site for residue MES A 509
03AC3SOFTWAREPHE A:150 , SER A:151 , HIS A:152 , GLY A:153 , THR A:154 , GLY A:170 , PHE A:171 , SER A:172 , HOH A:653binding site for residue GOL A 510
04AC4SOFTWAREARG A:56 , PRO A:454 , HOH A:688 , HOH A:839binding site for residue GOL A 511
05AC5SOFTWAREVAL A:433 , HIS A:434 , THR A:437 , LEU A:456 , GLU A:460 , HOH A:603binding site for residue GOL A 512
06AC6SOFTWARELYS A:35 , ARG A:114 , ASN A:117 , GLN A:130 , HOH A:739 , HOH A:771 , HOH A:881binding site for Poly-Saccharide residues NAG A 502 through NAG A 503 bound to ASN A 117
07AC7SOFTWAREASN A:192 , SER A:194 , THR A:201 , GLU A:202 , GLN A:479 , HOH A:602 , HOH A:618binding site for Poly-Saccharide residues NAG A 504 through NAG A 505 bound to ASN A 192
08AC8SOFTWAREPRO A:232 , ASN A:233 , GLU A:313 , HIS A:314binding site for Mono-Saccharide NAG A 506 bound to ASN A 233
09AC9SOFTWAREASN A:245 , ASN A:248 , HOH A:845binding site for Mono-Saccharide NAG A 507 bound to ASN A 245
10AD1SOFTWAREASN A:289 , HOH A:650 , HOH A:780binding site for Mono-Saccharide NAG A 508 bound to ASN A 289

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:30 -A:79

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5K8E)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5K8E)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5K8E)

(-) Exons   (0, 0)

(no "Exon" information available for 5K8E)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:473
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhh........hhhhhhhh............eee...hhhhhhhhhhhhhhhh..eeee.......hhhhh.....eeee......eee......eee....hhhhhhhhhhhhhhee.........hhhhhhhh.....hhhhhhhhhh.eeeeeee.....eeeee...hhhhhhhhhhhhhhh.eeeeeee..ee....eeeeeee....hhhhhhhhhhhhhhhhhh......eeeeeeee..eeeeeeee..hhhhhhhhhhhhhhhhh..eeeeeeehhhhhhhhhhh...............eeeeeeeee...hhhhhhhhhhhhhhhhhhh..eeeeeeee...........................eeeeeeeee........hhhhhhhhhhhhhhhhhh.ee.hhhhh....hhhhhhhhhhh.hhhhhhhhhhhhh................ Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5k8e A  25 AAIDECLKNAKVPVTARNSTEWKTDASPFNDRLPYTPAAIAKPATVEHIQAAVLCAAEVGVKANPKSGGHSYASFGLGGEDGHLVVELDRMYNVTLDPETHIATVQPGARLGHIATVLYEEGKRAFSHGTCPGVGVGGHSLHGGFGFSSHSHGLAVDWITSADVVLANGSLVTASETENPDLFWALRGAGSNFGIVASFRFKTFAAPPNVTSYEINLPWTNSSNVVKGWGALQEWLLNGGMPEEMNMRVLGNAFQTQLQGLYHGNASALKTAIQPLLALLDANLSSVQEHDWMEGFRHYAYSGEIDITDPGYDQSETFYSKSLVTSALPPDVLERVAEYWIETANKVRRSWYIIIDMYGGPNSAVTRVPPGAGSYAFRDPERHLFLYELYDRSFGPYPDDGFAFLDGWVHAFTGGLDSSDWGMYINYADPGLDRAEAQEVYYRQNLDRLRRIKQQLDPTELFYYPQAVEPAEV 497
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5K8E)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5K8E)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5K8E)

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)

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        G2QG48_MYCTT | G2QG48: 5l6f 5l6g

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