5L4N - JenaLib

Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   LEISHMANIA MAJOR PTERIDINE REDUCTASE 1 (PTR1) IN COMPLEX WITH COMPOUND 1

Authors :   L. Dello Iacono, F. Di Pisa, C. Pozzi, G. Landi, S. Mangani

Date :   26 May 16 (Deposition) - 22 Mar 17 (Release) - 29 Mar 17 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.35

Chains :   Asym./Biol. Unit : A,B,C,D

Keywords :   Leishmania Major, Pteridine Reductase 1, Ptr1, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   F. Di Pisa, G. Landi, L. Dello Iacono, C. Pozzi, C. Borsari, S. Ferrari, M. Santucci, N. Santarem, A. Cordeiro-Da-Silva, C. B. Moraes, L. M. Alcantara, V. Fontana, L. H. Freitas-Junior, S. Gul M. Kuzikov, B. Behrens, I. Pohner, R. C. Wade, M. P. Costi, S. Mangani
Chroman-4-One Derivatives Targeting Pteridine Reductase 1 And Showing Anti-Parasitic Activity.
Molecules V. 22 2017
PubMed-ID: 28282886 | Reference-DOI: 10.3390/MOLECULES22030426

Molecule 1 - PTERIDINE REDUCTASE 1
	Chains	:	A, B, C, D
	EC Number	:	1.5.1.33
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	PET-15B
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	PTR1, HMTXR, L1063.01, LMJF23.0270, LMJF_23_0270
	Organism Scientific	:	LEISHMANIA MAJOR
	Organism Taxid	:	5664
	Synonym	:	H REGION METHOTREXATE RESISTANCE PROTEIN

		1	2	3	4
Asymmetric/Biological Unit	:	A	B	C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (8, 17)

No.	Name	Count	Type	Full Name
1	6QT	2	Ligand/Ion	(2~{R})-2-(3-HYDROXYPHENYL)-6-OXIDANYL-2,3-DIHYDROCHROMEN-4-ONE
2	ACT	1	Ligand/Ion	ACETATE ION
3	CSX	4	Mod. Amino Acid	S-OXY CYSTEINE
4	EDO	3	Ligand/Ion	1,2-ETHANEDIOL
5	GOL	1	Ligand/Ion	GLYCEROL
6	NDP	4	Ligand/Ion	NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
7	PEG	1	Ligand/Ion	DI(HYDROXYETHYL)ETHER
8	PGE	1	Ligand/Ion	TRIETHYLENE GLYCOL

Asymmetric Unit (13, 13)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ARG A:17 , SER A:111 , PHE A:113 , TYR A:194 , LEU A:226 , LEU A:229 , NDP A:602 , HOH A:739 , ARG D:287	binding site for residue 6QT A 601
02	AC2	SOFTWARE	ARG A:17 , LEU A:18 , HIS A:36 , TYR A:37 , HIS A:38 , ARG A:39 , SER A:40 , ALA A:64 , ASP A:65 , LEU A:66 , SER A:67 , ASN A:109 , ALA A:110 , SER A:111 , SER A:112 , ASP A:142 , MET A:179 , VAL A:180 , ASP A:181 , TYR A:194 , LYS A:198 , PRO A:224 , GLY A:225 , SER A:227 , 6QT A:601 , HOH A:712 , HOH A:718 , HOH A:720 , HOH A:724 , HOH A:727 , HOH A:742 , HOH A:764	binding site for residue NDP A 602
03	AC3	SOFTWARE	TYR A:248 , ARG A:250 , GLN C:216 , LYS C:270	binding site for residue GOL A 603
04	AC4	SOFTWARE	ARG B:17 , SER B:111 , PHE B:113 , TYR B:194 , LEU B:226 , NDP B:602 , HOH B:711 , ARG C:287	binding site for residue 6QT B 601
05	AC5	SOFTWARE	ARG B:17 , LEU B:18 , TYR B:37 , HIS B:38 , ARG B:39 , SER B:40 , ALA B:64 , ASP B:65 , LEU B:66 , SER B:67 , ASN B:109 , ALA B:110 , SER B:111 , SER B:112 , ASP B:142 , MET B:179 , VAL B:180 , ASP B:181 , TYR B:194 , LYS B:198 , PRO B:224 , GLY B:225 , LEU B:226 , SER B:227 , 6QT B:601 , HOH B:719 , HOH B:722 , HOH B:723 , HOH B:752 , HOH B:758 , HOH B:768	binding site for residue NDP B 602
06	AC6	SOFTWARE	ASP B:251 , SER B:252	binding site for residue ACT B 603
07	AC7	SOFTWARE	ARG C:17 , LEU C:18 , HIS C:36 , TYR C:37 , HIS C:38 , ARG C:39 , SER C:40 , ALA C:64 , ASP C:65 , LEU C:66 , ASN C:109 , ALA C:110 , SER C:111 , SER C:112 , ASP C:142 , VAL C:180 , ASP C:181 , TYR C:194 , LYS C:198 , PRO C:224 , GLY C:225 , LEU C:226 , SER C:227 , HOH C:421 , HOH C:445 , HOH C:446 , HOH C:453 , HOH C:466	binding site for residue NDP C 301
08	AC8	SOFTWARE	LYS A:270 , TYR C:248 , ARG C:250	binding site for residue PEG C 302
09	AC9	SOFTWARE	ARG D:17 , LEU D:18 , HIS D:36 , TYR D:37 , HIS D:38 , ARG D:39 , SER D:40 , ALA D:64 , ASP D:65 , LEU D:66 , SER D:67 , ASN D:109 , ALA D:110 , SER D:111 , SER D:112 , ASP D:142 , MET D:179 , VAL D:180 , ASP D:181 , TYR D:194 , LYS D:198 , PRO D:224 , GLY D:225 , LEU D:226 , SER D:227 , HOH D:406 , HOH D:415 , HOH D:419 , HOH D:468 , HOH D:473 , HOH D:474	binding site for residue NDP D 301
10	AD1	SOFTWARE	TYR D:248 , ARG D:250	binding site for residue PGE D 302
11	AD2	SOFTWARE	LYS D:168	binding site for residue EDO D 303
12	AD3	SOFTWARE	ASN D:57 , SER D:58 , TRP D:100	binding site for residue EDO D 304
13	AD4	SOFTWARE	ARG C:20 , THR C:50 , ARG D:20 , THR D:50	binding site for residue EDO D 305

(no "SS Bond" information available for 5L4N)

(no "Cis Peptide Bond" information available for 5L4N)

(no "SAP(SNP)/Variant" information available for 5L4N)

(no "PROSITE Motif" information available for 5L4N)

(no "Exon" information available for 5L4N)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:254
                                                                                                                                                                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee....hhhhhhhhhhhhhh..eeeeee..hhhhhhhhhhhhhhhh...eeeee.............hhhhhhhhhhhhhhhhhh...eeee.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeee...........hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeee......hhhhhh.......hhhhhhhhhhhhhhhhhh.....eeee..hhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5l4n A   5 TVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRAMETATADLFGSNAIAPYFLIKAFAHRVAGTPAKHRGTNYSIINMVDAMTNQPLLGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGLSVLVGHRSKVPLYQRDSSAAEVSDVVIFLCSSKAKYITGTcVKVDGGYSLTRA 288
                                    14        24        34        44        54        64        81        91       101       111       135       145       155       165       175       185       195       205       215       225    || 244       254       264       274 |     284    
                                                                                               73|                                    120|                                                                                            230|                                 276-CSX        
                                                                                                81                                     135                                                                                             240

Chain B from PDB  Type:PROTEIN  Length:254
                                                                                                                                                                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee....hhhhhhhhhhhhhh..eeeeee..hhhhhhhhhhhhhhhh...eeeee.............hhhhhhhhhhhhhhhhhh...eeee.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeee...........hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeee......hhhhh.......hhhhhhhhhhhhhhhhhh.....eeee..hhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5l4n B   5 TVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLREAMETATADLFGSNAIAPYFLIKAFAHRVAGTPAKHRGTNYSIINMVDAMTNQPLLGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGLSVLVHRSKVPLYQRDSSAAEVSDVVIFLCSSKAKYITGTcVKVDGGYSLTRA 288
                                    14        24        34        44        54        64        81        91       101       111       134       144       154       164       174       184       194       204       214       224     ||244       254       264       274 |     284    
                                                                                               73|                                    120|                                                                                             230|                                276-CSX        
                                                                                                81                                     134                                                                                              241

Chain C from PDB  Type:PROTEIN  Length:265
                                                                                                                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee....hhhhhhhhhhhhh...eeeeee..hhhhhhhhhhhhhhhh...eeeee.............hhhhhhhhhhhhhhhhhh...eeee.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeee...........hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeee.........hhhhhhhhhhh........hhhhhhhhhhhhhhhhhh.....eeee..hhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5l4n C   5 TVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRREAMETATADLFGSNAIAPYFLIKAFAHRVAGTPAKHRGTNYSIINMVDAMTNQPLLGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGLSVLVDDMPPAVWEGHRSKVPLYQRDSSAAEVSDVVIFLCSSKAKYITGTcVKVDGGYSLTRA 288
                                    14        24        34        44        54        64        81        91       101       111       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273  |    283     
                                                                                               73|                                    120|                                                                                                                                            276-CSX        
                                                                                                81                                     133

Chain D from PDB  Type:PROTEIN  Length:264
                                                                                                                                                                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeee....hhhhhhhhhhhhhh..eeeeee..hhhhhhhhhhhhhhhh...eeeee............hhhhhhhhhhhhhhhhhh...eeee.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeee...........hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeee.........hhhhhhhhhh..........hhhhhhhhhhhhhhhhh.....eeee..hhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5l4n D   5 TVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRREAMETATADLFGSNAIAPYFLIKAFAHRVAGTPAKHRGTNYSIINMVDAMTNQPLLGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGLSVLVDDMPPAVWEGHRSKVPLYQRDSSAAEVSDVVIFLCSSKAKYITGTcVKVDGGYSLTRA 288
                                    14        24        34        44        54        64       |82        92       102       112       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274 |     284    
                                                                                              72|                                    120|                                                                                                                                            276-CSX        
                                                                                               81                                     133

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(no "SCOP Domain" information available for 5L4N)

(no "CATH Domain" information available for 5L4N)

(no "Pfam Domain" information available for 5L4N)

Asymmetric/Biological Unit(hide GO term definitions)

Asymmetric/Biological Unit
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	Cis Peptide Bonds
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	5l4n
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	PTR1_LEIMA \| Q01782
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	1.5.1.33
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	PTR1_LEIMA \| Q01782
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UniProtKB/Swiss-Prot
	PTR1_LEIMA \| Q01782	:	1e7w 1e92 1w0c 2bf7 2bfa 2bfm 2bfo 2bfp 2qhx 3h4v 5l42

5k6a	TRYPANOSOMA BRUCEI PTERIDINE REDUCTASE 1 IN COMPLEX WITH COMPOUND 1
5l42	LEISHMANIA MAJOR PTERIDINE REDUCTASE 1 IN COMPLEX WITH COMPOUND 3

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (8, 17)

Sites (13, 13)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

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SCOP Domains (0, 0)

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Gene Ontology (9, 9)

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