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(-) Description

Title :  STRUCTURE OF THE CRENARCHAEAL FTSY GTPASE BOUND TO GDP
 
Authors :  G. Bange, K. Wild, I. Sinning
Date :  24 May 16  (Deposition) - 08 Jun 16  (Release) - 20 Jul 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym./Biol. Unit :  A
Keywords :  Co-Translational Protein Targeting, Signal Recognition Particle, Gtpase, Protein Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Wild, G. Bange, D. Motiejunas, J. Kribelbauer, A. Hendricks, B. Segnitz, R. C. Wade, I. Sinning
Structural Basis For Conserved Regulation And Adaptation Of The Signal Recognition Particle Targeting Complex.
J. Mol. Biol. V. 428 2880 2016
PubMed-ID: 27241309  |  Reference-DOI: 10.1016/J.JMB.2016.05.015

(-) Compounds

Molecule 1 - SIGNAL RECOGNITION PARTICLE RECEPTOR FTSY
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: NG DOMAIN, UNP RESIDUES 69-368
    Gene: FTSY, ATY89_10730, ATZ20_02285
    Organism Scientific: SULFOLOBUS ACIDOCALDARIUS
    Organism Taxid: 2285
    Synonym: SRP RECEPTOR

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
1GDP1Ligand/IonGUANOSINE-5'-DIPHOSPHATE
2SO41Ligand/IonSULFATE ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREVAL A:181 , GLY A:183 , VAL A:184 , GLY A:185 , LYS A:186 , THR A:187 , THR A:188 , LYS A:192 , ARG A:213 , GLN A:219 , LYS A:321 , ASP A:323 , GLY A:346 , VAL A:347 , GLY A:348 , GLN A:349binding site for residue GDP A 401
2AC2SOFTWARETYR A:87 , LYS A:88 , THR A:89 , PHE A:367 , SER A:368binding site for residue SO4 A 402

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5L3W)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5L3W)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5L3W)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5L3W)

(-) Exons   (0, 0)

(no "Exon" information available for 5L3W)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:297
                                                                                                                                                                                                                                                                                                                                         
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhee.hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.ee.hhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhh.....eeeeee.....hhhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhh..eee......hhhhhhhhhhhhhhhh...eeeee.......hhhhhhhhhhhhhhhh..eeeeeee..hhhhhhhhhhhhhhhh...eeeeehhhhh..hhhhhhhhhhh...eeeee.......eee.hhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5l3w A  72 ENKQENKRSFFDFLKYKTIKEDDLNDVIEELRFQLLDSDVSYEVTEKILEDLKNNLIGKKVSRREEVEEIVINTLKKSITEILTKNQKTDLIEKIRSSGKKPFVIIFFGVNGVGKTTTIAKVVNMLKKNNLSTIIAASDTFRAAAQEQLAYHASKLEVQLIRGKYGADPASVAFDAISFAKSRNIDVVLIDTAGRMHIDSDLVEELKRVLRIAKPDFRILILDSLAGSDALEQARHFENNVGYDAVILTKVDADAKGGIALSLAYELKKPVVYMGVGQNYDDLIPFSPDWFVERIFS 368
                                    81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5L3W)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5L3W)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5L3W)

(-) Gene Ontology  (9, 9)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

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        FTSY_SULAC | P27414: 5l3s

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