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(-) Description

Title :  CRYSTAL STRUCTURE OF A HUMAN FASL MUTANT IN COMPLEX WITH HUMAN DCR3
 
Authors :  W. Liu, J. B. Bonanno, S. C. Almo
Date :  03 Aug 16  (Deposition) - 07 Sep 16  (Release) - 16 Nov 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.10
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (3x)
Keywords :  Fasl, Cd95L, Dcr3, Tnf Ligand And Receptor, Decoy Receptor, Apoptosis (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  W. Liu, U. Ramagopal, H. Cheng, J. B. Bonanno, R. Toro, R. Bhosle, C. Zhan, S. C. Almo
Crystal Structure Of The Complex Of Human Fasl And Its Deco Receptor Dcr3.
Structure V. 24 2016 2016
PubMed-ID: 27806260  |  Reference-DOI: 10.1016/J.STR.2016.09.009

(-) Compounds

Molecule 1 - TUMOR NECROSIS FACTOR RECEPTOR SUPERFAMILY MEMBER 6B
    Chains: B
    Engineered: YES
    Expression System: DROSOPHILA
    Expression System Taxid: 7215
    Fragment: UNP RESIDUES 30-195
    Gene: TNFRSF6B, DCR3, TR6, UNQ186/PRO212
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: DECOY RECEPTOR 3,DCR3,DECOY RECEPTOR FOR FAS LIGAND,M68
 
Molecule 2 - TUMOR NECROSIS FACTOR LIGAND SUPERFAMILY MEMBER 6
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI-PICHIA PASTORIS SHUTTLE VECTOR PPPB1_S
    Expression System Taxid: 1182036
    Fragment: UNP RESIDUES 130-281
    Gene: FASLG, APT1LG1, CD95L, FASL, TNFSF6
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: APOPTOSIS ANTIGEN LIGAND,APTL,CD95 LIGAND,CD95-L,FAS ANTIGEN LIGAND,FASL

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (3x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
1NA1Ligand/IonSODIUM ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1NA-1Ligand/IonSODIUM ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS B:122binding site for residue NA B 301

(-) SS Bonds  (10, 10)

Asymmetric Unit
No.Residues
1A:202 -A:233
2B:49 -B:62
3B:52 -B:70
4B:73 -B:88
5B:91 -B:105
6B:95 -B:113
7B:115 -B:126
8B:132 -B:150
9B:153 -B:168
10B:174 -B:193

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Met A:158 -Pro A:159

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5L36)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5L36)

(-) Exons   (0, 0)

(no "Exon" information available for 5L36)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:138
                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeee..................eee..eee..eee....eeeeeeeeeeeee.......eeeeeeeee..eeeeeeeeeeee.........eeeeeeeeeeeee....eeeeee.hhh.ee......eeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5l36 A 143 LRKVAHLTGKSSRSMPLEWEHELGLALLSGVKYKKGGLVINETGLYFVYSKVYFRGQSCNNLPLSHKVYMRNSKYPQDLVMMEGKMMSYCTTGQMWARSSYLGAVFNLTSADHLYVNVSELSLVNFEESQTFFGLYKL 281
                                   152||     163       173       183       193       203       213       223       233       243       253       263       273        
                                    153|                                                                                                                              
                                     155                                                                                                                              


Chain B from PDB  Type:PROTEIN  Length:153
                                                                                                                                                                                         
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee......eeeee.....eeeee........eeee....ee..........ee........eeeee........eeee...eeee..eeee.......eeeee........eeee....ee..........ee............... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5l36 B  33 TPTYPWRDAETGERLVCAQCPPGTFVQRPCRRDSPTTCGPCPPRHYTQFWNYLERCRYCNVLCGEREEEARACHATHNRACRCRTGFFAHAGFCLEHASCPPGAGVIAPGTPSQNTQCQPCPPGTFSASSSSSEQCQPHRNCVPGSSSHDTLC 193
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172 ||    190   
                                                                                                                                                                       174|          
                                                                                                                                                                        183
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5L36)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5L36)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5L36)

(-) Gene Ontology  (60, 68)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TNF6B_HUMAN | O95407: 3k51 3mhd 3mi8 4j6g 4kgg 4kgq 4msv
        TNFL6_HUMAN | P48023: 1bzi 4msv 5l19

(-) Related Entries Specified in the PDB File

4msv 5l19