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(-) Description

Title :  CRYSTAL STRUCTURE OF FASL AND DCR3 COMPLEX
 
Authors :  W. Liu, U. A. Ramagopal, C. Zhan, J. B. Bonanno, R. C. Bhosle, S. G. Nathen S. C. Almo, Atoms-To-Animals: The Immune Function Network (Ifn York Structural Genomics Research Consortium (Nysgrc)
Date :  18 Sep 13  (Deposition) - 27 Nov 13  (Release) - 16 Nov 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (3x)
Keywords :  Fasl, Dcr3, Tnf, Tnfr, Tnf6, Structural Genomics, Psi-Biology, New York Structural Genomics, Research Consortium, Nysgrc, Immunity, Tnf Supe Cd95L, Fas Ligand, Membrane, Atoms-To-Animals: The Immune Function Network, Ifn, Jelly-Roll Fold, Bind Tnf Receptor Fas, Protein Structure Initiative, New York Structural Genomics Research Consortium, Cd95L, Tnf Superfamily, Secreted Protein, Cytokine, Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  W. Liu, U. Ramagopal, H. Cheng, J. B. Bonanno, R. Toro, R. Bhosle, C. Zhan, S. C. Almo
Crystal Structure Of The Complex Of Human Fasl And Its Deco Receptor Dcr3.
Structure V. 24 2016 2016
PubMed-ID: 27806260  |  Reference-DOI: 10.1016/J.STR.2016.09.009

(-) Compounds

Molecule 1 - TUMOR NECROSIS FACTOR RECEPTOR SUPERFAMILY MEMBER 6B
    Chains: B
    Engineered: YES
    Expression System: DROSOPHILA
    Expression System Cell Line: S2
    Expression System Plasmid: PMT-BIP-V5-HIS
    Expression System Taxid: 7215
    Fragment: UNP RESIDUES 30-195
    Gene: TNFRSF6B, DCR3, TR6, UNQ186/PRO212
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: DECOY RECEPTOR 3, DCR3, DECOY RECEPTOR FOR FAS LIGAND, M68
 
Molecule 2 - TUMOR NECROSIS FACTOR LIGAND SUPERFAMILY MEMBER 6
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET3A
    Expression System Strain: BL21PHYS
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 130-281
    Gene: FASLG, APT1LG1, CD95L, FASL, TNFSF6
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: APOPTOSIS ANTIGEN LIGAND, APTL, CD95 LIGAND, CD95-L, FAS ANTIGEN LIGAND, FAS LIGAND, FASL, TUMOR NECROSIS FACTOR LIGAND SUPERFAMILY MEMBER 6, MEMBRANE FORM, TUMOR NECROSIS FACTOR LIGAND SUPERFAMILY MEMBER 6, SOLUBLE FORM, RECEPTOR-BINDING FASL ECTODOMAIN, SOLUBLE FAS LIGAND, SFASL, ADAM10-PROCESSED FASL FORM, APL, FASL INTRACELLULAR DOMAIN, FASL ICD, SPPL2A-PROCESSED FASL FORM, SPA

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (3x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric Unit (2, 2)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2MG1Ligand/IonMAGNESIUM ION
Biological Unit 1 (1, 3)
No.NameCountTypeFull Name
1GOL3Ligand/IonGLYCEROL
2MG-1Ligand/IonMAGNESIUM ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS B:132 , PRO B:133 , ALA B:136 , SER B:159 , SER B:161 , HOH B:424BINDING SITE FOR RESIDUE MG B 301
2AC2SOFTWAREASN A:215 , TYR A:218 , GLN A:220 , LEU A:222 , LEU B:85 , ARG B:89BINDING SITE FOR RESIDUE GOL A 301

(-) SS Bonds  (10, 10)

Asymmetric Unit
No.Residues
1A:202 -A:233
2B:49 -B:62
3B:52 -B:70
4B:73 -B:88
5B:91 -B:105
6B:95 -B:113
7B:115 -B:126
8B:132 -B:150
9B:153 -B:168
10B:174 -B:193

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Met A:158 -Pro A:159

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4MSV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4MSV)

(-) Exons   (0, 0)

(no "Exon" information available for 4MSV)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:139
                                                                                                                                                                           
               SCOP domains d4msva_ A: automated matches                                                                                                                SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee..........ee......eee..eee..eee....eeeeeeeeeeeee.......eeeeeeee.......eeeeeeee.........eeeeeeeeeeeee....eeeeee.hhh.ee......eeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4msv A 143 LRKVAHLTGKSNSRSMPLEWEDTYGIVLLSGVKYKKGGLVINETGLYFVYSKVYFRGQSCNNLPLSHKVYMRNSKYPQDLVMMEGKMMSYCTTGQMWARSSYLGAVFNLTSADHLYVNVSELSLVNFEESQTFFGLYKL 281
                                   152       162       172       182       192       202       212       222       232       242       252       262       272         


Chain B from PDB  Type:PROTEIN  Length:160
                                                                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee......eeeee.....eeeee........eeee....ee..........ee........eeeee........eeee...eeee..eeee.......eeeee........eeee....ee..........ee...................... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4msv B  33 TPTYPWRDAETGERLVCAQCPPGTFVQRPCRRDSPTTCGPCPPRHYTQFWNYLERCRYCNVLCGEREEEARACHATHNRACRCRTGFFAHAGFCLEHASCPPGAGVIAPGTPSQNTQCQPCPPGTFSASSSSSEQCQPHRNCTALLALNVPGSSSHDTLC 193
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172    || 183       193
                                                                                                                                                                          177|              
                                                                                                                                                                           179
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4MSV)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4MSV)

(-) Gene Ontology  (60, 68)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TNF6B_HUMAN | O95407: 3k51 3mhd 3mi8 4j6g 4kgg 4kgq 5l36
        TNFL6_HUMAN | P48023: 1bzi 5l19 5l36

(-) Related Entries Specified in the PDB File

3k51 RELATED ID: NYSGRC-011095 RELATED DB: TARGETTRACK RELATED ID: NYSGRC-011073 RELATED DB: TARGETTRACK
3mhd
4en0
4j6g
4kgg
4kgq