Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asym./Biol. Unit
(-)Asym./Biol. Unit - sites
collapse expand < >
Image Asym./Biol. Unit
Asym./Biol. Unit  (Jmol Viewer)
Image Asym./Biol. Unit - sites
Asym./Biol. Unit - sites  (Jmol Viewer)

(-) Description

Title :  GLUK2EM WITH 2S,4R-4-METHYLGLUTAMATE
 
Authors :  J. R. Meyerson, S. Chittori, A. Merk, P. Rao, T. H. Han, M. Serpe, M. L. May S. Subramaniam
Date :  13 Jul 16  (Deposition) - 07 Sep 16  (Release) - 28 Sep 16  (Revision)
Method :  ELECTRON MICROSCOPY
Resolution :  3.80
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Gluk2Em With 2S, 4R-4-Methylglutamate, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. R. Meyerson, S. Chittori, A. Merk, P. Rao, T. H. Han, M. Serpe, M. L. Mayer, S. Subramaniam
Structural Basis Of Kainate Subtype Glutamate Receptor Desensitization.
Nature V. 537 567 2016
PubMed-ID: 27580033  |  Reference-DOI: 10.1038/NATURE19352

(-) Compounds

Molecule 1 - GLUTAMATE RECEPTOR IONOTROPIC, KAINATE 2
    Chains: A, B, C, D
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Common: FALL ARMYWORM
    Expression System Plasmid: PFASTBAC1
    Expression System Taxid: 7108
    Expression System Vector Type: BACULOVIRUS
    Gene: GRIK2, GLUR6
    Organism Common: RAT
    Organism Scientific: RATTUS NORVEGICUS
    Organism Taxid: 10116
    Synonym: GLUK2, GLUTAMATE RECEPTOR 6, GLUR6

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric/Biological Unit (1, 4)
No.NameCountTypeFull Name
1SYM4Ligand/Ion2S,4R-4-METHYLGLUTAMATE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:457 , PRO A:485 , LEU A:486 , THR A:487 , ARG A:492 , VAL A:654 , GLY A:657 , SER A:658 , THR A:659 , GLU A:707binding site for residue SYM A 901
2AC2SOFTWARETYR B:457 , THR B:487 , ARG B:492 , VAL B:654 , ASP B:656 , GLY B:657 , SER B:658 , THR B:659 , MET B:660 , GLU B:707binding site for residue SYM B 901
3AC3SOFTWARETYR C:457 , PRO C:485 , LEU C:486 , THR C:487 , ARG C:492 , VAL C:654 , GLY C:657 , SER C:658 , THR C:659 , GLU C:707binding site for residue SYM C 901
4AC4SOFTWARETYR D:457 , THR D:487 , ARG D:492 , VAL D:654 , ASP D:656 , GLY D:657 , SER D:658 , THR D:659 , MET D:660 , GLU D:707binding site for residue SYM D 901

(-) SS Bonds  (8, 8)

Asymmetric/Biological Unit
No.Residues
1A:65 -A:316
2A:719 -A:773
3B:65 -B:316
4B:719 -B:773
5C:65 -C:316
6C:719 -C:773
7D:65 -D:316
8D:719 -D:773

(-) Cis Peptide Bonds  (20, 20)

Asymmetric/Biological Unit
No.Residues
1Gly A:17 -Pro A:18
2Glu A:410 -Pro A:411
3Lys A:513 -Pro A:514
4Gly A:520 -Val A:521
5Ser A:635 -Pro A:636
6Gly B:17 -Pro B:18
7Ala B:391 -Asn B:392
8Glu B:410 -Pro B:411
9Lys B:513 -Pro B:514
10Ser B:635 -Pro B:636
11Gly C:17 -Pro C:18
12Glu C:410 -Pro C:411
13Lys C:513 -Pro C:514
14Gly C:520 -Val C:521
15Ser C:635 -Pro C:636
16Gly D:17 -Pro D:18
17Ala D:391 -Asn D:392
18Glu D:410 -Pro D:411
19Lys D:513 -Pro D:514
20Ser D:635 -Pro D:636

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5KUF)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5KUF)

(-) Exons   (0, 0)

(no "Exon" information available for 5KUF)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:750
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeeeeee......hhhhhhhhhhhhhhhhh.........eeeeeeee..hhhhhhhhhhhhhh.....ee...hhhhhhhhhhhhhhhh..eee..............eee...hhhhhhhhhhhhhhhh...eeeeee..hhhhhhhhhhhhhhhh...eeeeee......hhhhhhhhhhhh....eeee.hhhhhhhhhhhhhhh.......eeee..hhhhhh.hhhhhh...eeeeee.....hhhhhhhhhhhhhhhh...............hhhhhhhhhhhhhhhhhhhh..................hhhhhhhhhhhh.eee..eee.............eeeeee....eeeeeeee...ee...........hhhhhh...eeeeee.......ee.......hhhh.ee..hhhhhhhhhhhhh.eeeeee................hhhhhhhhhh...ee.............eee..........eeee...................hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhh...eee....hhhhhhhhh..hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhh.eee..hhhhhhhhhhhh..eeee...........eee....hhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5kuf A   2 THVLRFGGIFEYVESGPMGAEELAFRFAVNTINRNRTLLPNTTLTYDTQKINLYDSFEASKKACDQLSLGVAAIFGPSHSSSANAVQSICNALGVPHIQTRWKHQVSDNKDSFYVSLYPDFSSLSRAILDLVQFFKWKTVTVVYDDSTGLIRLQELIKAPSRYNLRLKIRQLPADTKDAKPLLKEMKRGKEFHVIFDCSHEMAAGILKQALAMGMMTEYYHYIFTTLDLFALDVEPYRYSGVNMTGFRILNTENTQVSSIIEKWSMERLQAPPKPDSGLLDGFMTTDAALMYDAVHVVSVAVQQFPQMTVSSLQCNRHKPWRFGTRFMSLIKEAHWEGLTGRITFNKTNGLRTDFDLDVISLKEEGLEKIGTWDPASGLNMTESQKGKPANITDSLSNRSLIVTTILEEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAVAPLTITYVREKVIDFSKPFMTLGISILYRKPNGTNPGVFSFLNPLSPDIWMYVLLAYLGVSVVLFVIARALSTRIVGGIWWFFTLIIISSYTANLAAFLTVERMESPIDSADDLAKQTKIEYGAVEDGSTMTFFKKSKISTYDKMWAFMSSRRQSVLVKSSEEGIQRVLTSDYALLMESTTIEFVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITIAILQLQEEGKLHMMKEKWWRGNGCPEQNIGGIFIVLAAGLVLSVFVAV 808
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551||     607       617       627       637       647       657       667       677       687       697       707       717       727       737       747       757       767       788       798       808
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                552|                                                                                                                                                                             775|                     
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 599                                                                                                                                                                              787                     


Chain B from PDB  Type:PROTEIN  Length:750
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeee..........hhhhhhhhhhhhhhhhh.......eeee.........hhhhhhhhhhhhhh....ee...hhhhhhhhhhhhhhh...eee..............eeeeeehhhhhhhhhhhhhhhhh..eeeeee...hhhhhhhhhhh.......eeeeee.......hhhhhhhhhhhh...eee..hhhhhhhhhhhhhhh.......eee...hhhhhh..........eeee.......hhhhhhhhhhhhhhhh...............hhhhhhhhhhhhhhhhhhh...................hhhhhhhhhh....ee..ee........ee....eeeeeee..eeeeeeeee...eeee.hhhh..............eeeee................hhhhh..hhhhhhhhhhhhhh...eeeee................hhhhhhhhhh....ee.....hhhhhhhh......eee..eeeee.......hhhhhh...hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhh...........hhhhhhhhh....hhhhhhhhhh.hhhhhh..hhhhhhhhhhhh...eeehhhhhhhhhhh...eeee......eee.ee......hhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5kuf B   2 THVLRFGGIFEYVESGPMGAEELAFRFAVNTINRNRTLLPNTTLTYDTQKINLYDSFEASKKACDQLSLGVAAIFGPSHSSSANAVQSICNALGVPHIQTRWKHQVSDNKDSFYVSLYPDFSSLSRAILDLVQFFKWKTVTVVYDDSTGLIRLQELIKAPSRYNLRLKIRQLPADTKDAKPLLKEMKRGKEFHVIFDCSHEMAAGILKQALAMGMMTEYYHYIFTTLDLFALDVEPYRYSGVNMTGFRILNTENTQVSSIIEKWSMERLQAPPKPDSGLLDGFMTTDAALMYDAVHVVSVAVQQFPQMTVSSLQCNRHKPWRFGTRFMSLIKEAHWEGLTGRITFNKTNGLRTDFDLDVISLKEEGLEKIGTWDPASGLNMTESQKGKPANITDSLSNRSLIVTTILEEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAVAPLTITYVREKVIDFSKPFMTLGISILYRKPNGTNPGVFSFLNPLSPDIWMYVLLAYLGVSVVLFVIARALSTRIVGGIWWFFTLIIISSYTANLAAFLTVERMESPIDSADDLAKQTKIEYGAVEDGSTMTFFKKSKISTYDKMWAFMSSRRQSVLVKSSEEGIQRVLTSDYALLMESTTIEFVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITIAILQLQEEGKLHMMKEKWWRGNGCPEQNIGGIFIVLAAGLVLSVFVAV 808
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551||     607       617       627       637       647       657       667       677       687       697       707       717       727       737       747       757       767       788       798       808
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                552|                                                                                                                                                                             775|                     
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 599                                                                                                                                                                              787                     


Chain C from PDB  Type:PROTEIN  Length:750
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeeeeee......hhhhhhhhhhhhhhhhh.........eeeeeeee..hhhhhhhhhhhhhh.....ee...hhhhhhhhhhhhhhhh..eee..............eee...hhhhhhhhhhhhhhhh...eeeeee..hhhhhhhhhhhhhhhh...eeeeee......hhhhhhhhhhhh....eeee.hhhhhhhhhhhhhhh.......eeee..hhhhhh.hhhhhh...eeeeee.....hhhhhhhhhhhhhhhh...............hhhhhhhhhhhhhhhhhhhh..................hhhhhhhhhhhh.eee..eee.............eeeeee....eeeeeeee...ee...........hhhhhh...eeeeee.......ee.......hhhh.ee..hhhhhhhhhhhhh.eeeeee................hhhhhhhhhh...ee.............eee..........eeee...................hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhh...eee....hhhhhhhhh..hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhh.eee..hhhhhhhhhhhh..eeee...........eee....hhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5kuf C   2 THVLRFGGIFEYVESGPMGAEELAFRFAVNTINRNRTLLPNTTLTYDTQKINLYDSFEASKKACDQLSLGVAAIFGPSHSSSANAVQSICNALGVPHIQTRWKHQVSDNKDSFYVSLYPDFSSLSRAILDLVQFFKWKTVTVVYDDSTGLIRLQELIKAPSRYNLRLKIRQLPADTKDAKPLLKEMKRGKEFHVIFDCSHEMAAGILKQALAMGMMTEYYHYIFTTLDLFALDVEPYRYSGVNMTGFRILNTENTQVSSIIEKWSMERLQAPPKPDSGLLDGFMTTDAALMYDAVHVVSVAVQQFPQMTVSSLQCNRHKPWRFGTRFMSLIKEAHWEGLTGRITFNKTNGLRTDFDLDVISLKEEGLEKIGTWDPASGLNMTESQKGKPANITDSLSNRSLIVTTILEEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAVAPLTITYVREKVIDFSKPFMTLGISILYRKPNGTNPGVFSFLNPLSPDIWMYVLLAYLGVSVVLFVIARALSTRIVGGIWWFFTLIIISSYTANLAAFLTVERMESPIDSADDLAKQTKIEYGAVEDGSTMTFFKKSKISTYDKMWAFMSSRRQSVLVKSSEEGIQRVLTSDYALLMESTTIEFVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITIAILQLQEEGKLHMMKEKWWRGNGCPEQNIGGIFIVLAAGLVLSVFVAV 808
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551||     607       617       627       637       647       657       667       677       687       697       707       717       727       737       747       757       767       788       798       808
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                552|                                                                                                                                                                             775|                     
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 599                                                                                                                                                                              787                     


Chain D from PDB  Type:PROTEIN  Length:750
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeee..........hhhhhhhhhhhhhhhhh.......eeee.........hhhhhhhhhhhhhh....ee...hhhhhhhhhhhhhhh...eee..............eeeeeehhhhhhhhhhhhhhhhh..eeeeee...hhhhhhhhhhh.......eeeeee.......hhhhhhhhhhhh...eee..hhhhhhhhhhhhhhh.......eee...hhhhhh..........eeee.......hhhhhhhhhhhhhhhh...............hhhhhhhhhhhhhhhhhhh...................hhhhhhhhhh....ee..ee........ee....eeeeeee..eeeeeeeee...eeee.hhhh..............eeeee................hhhhh..hhhhhhhhhhhhhh...eeeee................hhhhhhhhhh....ee.....hhhhhhhh......eee..eeeee.......hhhhhh...hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhh...........hhhhhhhhh....hhhhhhhhhh.hhhhhh..hhhhhhhhhhhh...eeehhhhhhhhhhh...eeee......eee.ee......hhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5kuf D   2 THVLRFGGIFEYVESGPMGAEELAFRFAVNTINRNRTLLPNTTLTYDTQKINLYDSFEASKKACDQLSLGVAAIFGPSHSSSANAVQSICNALGVPHIQTRWKHQVSDNKDSFYVSLYPDFSSLSRAILDLVQFFKWKTVTVVYDDSTGLIRLQELIKAPSRYNLRLKIRQLPADTKDAKPLLKEMKRGKEFHVIFDCSHEMAAGILKQALAMGMMTEYYHYIFTTLDLFALDVEPYRYSGVNMTGFRILNTENTQVSSIIEKWSMERLQAPPKPDSGLLDGFMTTDAALMYDAVHVVSVAVQQFPQMTVSSLQCNRHKPWRFGTRFMSLIKEAHWEGLTGRITFNKTNGLRTDFDLDVISLKEEGLEKIGTWDPASGLNMTESQKGKPANITDSLSNRSLIVTTILEEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAVAPLTITYVREKVIDFSKPFMTLGISILYRKPNGTNPGVFSFLNPLSPDIWMYVLLAYLGVSVVLFVIARALSTRIVGGIWWFFTLIIISSYTANLAAFLTVERMESPIDSADDLAKQTKIEYGAVEDGSTMTFFKKSKISTYDKMWAFMSSRRQSVLVKSSEEGIQRVLTSDYALLMESTTIEFVTQRNCNLTQIGGLIDSKGYGVGTPMGSPYRDKITIAILQLQEEGKLHMMKEKWWRGNGCPEQNIGGIFIVLAAGLVLSVFVAV 808
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551||     607       617       627       637       647       657       667       677       687       697       707       717       727       737       747       757       767       788       798       808
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                552|                                                                                                                                                                             775|                     
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 599                                                                                                                                                                              787
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5KUF)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5KUF)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5KUF)

(-) Gene Ontology  (52, 52)

Asymmetric/Biological Unit(hide GO term definitions)

 Visualization

(-) Interactive Views

Asymmetric/Biological Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    SYM  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Ala B:391 - Asn B:392   [ RasMol ]  
    Ala D:391 - Asn D:392   [ RasMol ]  
    Glu A:410 - Pro A:411   [ RasMol ]  
    Glu B:410 - Pro B:411   [ RasMol ]  
    Glu C:410 - Pro C:411   [ RasMol ]  
    Glu D:410 - Pro D:411   [ RasMol ]  
    Gly A:17 - Pro A:18   [ RasMol ]  
    Gly A:520 - Val A:521   [ RasMol ]  
    Gly B:17 - Pro B:18   [ RasMol ]  
    Gly C:17 - Pro C:18   [ RasMol ]  
    Gly C:520 - Val C:521   [ RasMol ]  
    Gly D:17 - Pro D:18   [ RasMol ]  
    Lys A:513 - Pro A:514   [ RasMol ]  
    Lys B:513 - Pro B:514   [ RasMol ]  
    Lys C:513 - Pro C:514   [ RasMol ]  
    Lys D:513 - Pro D:514   [ RasMol ]  
    Ser A:635 - Pro A:636   [ RasMol ]  
    Ser B:635 - Pro B:636   [ RasMol ]  
    Ser C:635 - Pro C:636   [ RasMol ]  
    Ser D:635 - Pro D:636   [ RasMol ]  
 

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym./Biol. Unit PNG format | Asym./Biol. Unit - sites PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  5kuf
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  GRIK2_RAT | P42260
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  GRIK2_RAT | P42260
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        GRIK2_RAT | P42260: 1s50 1s7y 1s9t 1sd3 1tt1 1yae 2i0b 2i0c 2xxr 2xxt 2xxu 2xxv 2xxw 2xxx 2xxy 3g3f 3g3g 3g3h 3g3i 3g3j 3g3k 3h6g 3h6h 3qlt 3qlu 3qlv 4bdl 4bdm 4bdn 4bdo 4bdq 4bdr 4h8i 4uqq 5cmk 5cmm 5kuh

(-) Related Entries Specified in the PDB File

5kuh