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(-) Description

Title :  HIV-1 INTEGRASE CATALYTIC CORE DOMAIN IN COMPLEX WITH AN ALLOSTERIC INHIBITOR, 3-(1H-PYRROL-1-YL)-2-THIOPHENECARBOXYLIC ACID
 
Authors :  D. Patel, J. D. Bauman, E. Arnold
Date :  07 Jul 16  (Deposition) - 28 Sep 16  (Release) - 16 Nov 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym./Biol. Unit :  A
Keywords :  Hiv-1 Integrase Catalytic Core Domain, P75/Ledgf Inhibitor, Hydrolase, Transferase-Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. Patel, J. Antwi, P. C. Koneru, E. Serrao, S. Forli, J. J. Kessl, L. Feng, N. Deng, R. M. Levy, J. R. Fuchs, A. J. Olson, A. N. Engelman, J. D. Bauman, M. Kvaratskhelia, E. Arnold
A New Class Of Allosteric Hiv-1 Integrase Inhibitors Identified By Crystallographic Fragment Screening Of The Catalytic Core Domain.
J. Biol. Chem. V. 291 23569 2016
PubMed-ID: 27645997  |  Reference-DOI: 10.1074/JBC.M116.753384

(-) Compounds

Molecule 1 - INTEGRASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Mutation: YES
    Organism Scientific: HUMAN IMMUNODEFICIENCY VIRUS 1
    Organism Taxid: 11676

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 5)

Asymmetric/Biological Unit (3, 5)
No.NameCountTypeFull Name
16XI2Ligand/Ion3-PYRROL-1-YLTHIOPHENE-2-CARBOXYLIC ACID
2CAF2Mod. Amino AcidS-DIMETHYLARSINOYL-CYSTEINE
3DMS1Ligand/IonDIMETHYL SULFOXIDE

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETRP A:131binding site for residue DMS A 301
2AC2SOFTWARECAF A:65 , GLU A:92 , THR A:93 , GLY A:94 , SER A:119 , ASN A:120 , THR A:122 , SER A:123 , HOH A:419 , HOH A:448 , HOH A:467 , HOH A:485binding site for residue 6XI A 302
3AC3SOFTWAREGLU A:170 , HOH A:401 , HOH A:438binding site for residue 6XI A 303

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5KRS)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5KRS)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 5KRS)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:148
                                                                                                                                                                                    
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeee..eeeeeeee.....eeeeee...hhhhhhhhhhhhhhhh...eee..hhhhhhhhhhhhhhhhhh.ee.........hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh......hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5krs A  55 DSSPGIWQLDcTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSNFTSTTVKAAcWWAGIKQEFGIPYNPGVIESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNKKRKGGGYSAGERIVDIIATD 207
                                    64|       74        84        94       104       114       124     | 134       144||     157       167       177       187 ||    199        
                                     65-CAF                                                          130-CAF        145|                                     189|               
                                                                                                                     149                                      192
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5KRS)

(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (14, 14)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        Q76353_9HIV1 | Q76353: 1biz 1qs4 3nf6 3nf7 3nf8 3nf9 3nfa
UniProtKB/TrEMBL
        Q76353_9HIV1 | Q76353: 1hyv 1hyz 3lpt 3lpu 3zcm 3zso 3zsq 3zsr 3zsv 3zsw 3zsx 3zsy 3zsz 3zt0 3zt1 3zt2 3zt3 3zt4 4ce9 4cea 4ceb 4cec 4ced 4cee 4cef 4ceo 4ceq 4cer 4ces 4cez 4cf0 4cf1 4cf2 4cf8 4cf9 4cfa 4cfb 4cfc 4cfd 4cgd 4cgf 4cgg 4cgh 4cgi 4cgj 4chn 4cho 4chp 4chq 4chy 4chz 4cie 4cif 4cig 4cj3 4cj4 4cj5 4cje 4cjf 4cjk 4cjl 4cjp 4cjq 4cjr 4cjs 4cjt 4cju 4cjv 4cjw 4ck1 4ck2 4ck3 4lh4 4lh5 4ovl 4y1c 4y1d 5kgw 5kgx 5krt 5u1c

(-) Related Entries Specified in the PDB File

5krb