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(-) Description

Title :  HIV1 CATALYTIC CORE DOMAIN IN COMPLEX WITH AN INHIBITOR (2~{S})-2-[3-(3,4-DIHYDRO-2~{H}-CHROMEN-6-YL)-1-METHYL-INDOL-2-YL]-2-[(2-METHYLPROPAN-2-YL)OXY]ETHANOIC ACID
 
Authors :  L. Feng, M. Kobe, M. Kvaratskhelia
Date :  13 Jun 16  (Deposition) - 19 Oct 16  (Release) - 02 Nov 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.67
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Integrase Allini, Nucleic Acid Binding, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. A. Patel, N. Kvaratskhelia, Y. Mansour, J. Antwi, L. Feng, P. Koneru M. J. Kobe, N. Jena, G. Shi, M. S. Mohamed, C. Li, J. J. Kessl, J. R. Fuchs
Indole-Based Allosteric Inhibitors Of Hiv-1 Integrase.
Bioorg. Med. Chem. Lett. V. 26 4748 2016
PubMed-ID: 27568085  |  Reference-DOI: 10.1016/J.BMCL.2016.08.037

(-) Compounds

Molecule 1 - INTEGRASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Scientific: HUMAN IMMUNODEFICIENCY VIRUS 1
    Organism Taxid: 11676

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 4)

Asymmetric Unit (3, 4)
No.NameCountTypeFull Name
17SK1Ligand/Ion(2S)-TERT-BUTOXY[3-(3,4-DIHYDRO-2H-1-BENZOPYRAN-6-YL)-1-METHYL-1H-INDOL-2-YL]ACETIC ACID
2CAF2Mod. Amino AcidS-DIMETHYLARSINOYL-CYSTEINE
3SO41Ligand/IonSULFATE ION
Biological Unit 1 (3, 8)
No.NameCountTypeFull Name
17SK2Ligand/Ion(2S)-TERT-BUTOXY[3-(3,4-DIHYDRO-2H-1-BENZOPYRAN-6-YL)-1-METHYL-1H-INDOL-2-YL]ACETIC ACID
2CAF4Mod. Amino AcidS-DIMETHYLARSINOYL-CYSTEINE
3SO42Ligand/IonSULFATE ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLN A:95 , THR A:125 , THR A:128 , ALA A:129 , TRP A:132 , ALA A:169 , GLU A:170 , HIS A:171 , THR A:174 , MET A:178binding site for residue 7SK A 301
2AC2SOFTWAREHIS A:114binding site for residue SO4 A 302

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5KGX)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5KGX)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5KGX)

(-) Exons   (0, 0)

(no "Exon" information available for 5KGX)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:136
                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeee..ee..eeeeeeee.....eeeeee...hhhhhhhhhhhhhhhh...eee..hhhhhhhhhhhhhhhhh..ee..hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh....hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5kgx A  56 CSPGIWQLDcTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSNFTSTTVKTAcWWAGIKQEESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNKKRKGYSAGERIVDIIATDI 208
                                    65        75        85        95       105       115       125    |  135  ||   158       168       178       188|      202      
                                    65-CAF                                                          130-CAF 138|                                 188|               
                                                                                                             152                                  193
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5KGX)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5KGX)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5KGX)

(-) Gene Ontology  (14, 14)

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  5kgx
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  Q76353_9HIV1 | Q76353
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        Q76353_9HIV1 | Q76353: 1biz 1qs4 3nf6 3nf7 3nf8 3nf9 3nfa
UniProtKB/TrEMBL
        Q76353_9HIV1 | Q76353: 1hyv 1hyz 3lpt 3lpu 3zcm 3zso 3zsq 3zsr 3zsv 3zsw 3zsx 3zsy 3zsz 3zt0 3zt1 3zt2 3zt3 3zt4 4ce9 4cea 4ceb 4cec 4ced 4cee 4cef 4ceo 4ceq 4cer 4ces 4cez 4cf0 4cf1 4cf2 4cf8 4cf9 4cfa 4cfb 4cfc 4cfd 4cgd 4cgf 4cgg 4cgh 4cgi 4cgj 4chn 4cho 4chp 4chq 4chy 4chz 4cie 4cif 4cig 4cj3 4cj4 4cj5 4cje 4cjf 4cjk 4cjl 4cjp 4cjq 4cjr 4cjs 4cjt 4cju 4cjv 4cjw 4ck1 4ck2 4ck3 4lh4 4lh5 4ovl 4y1c 4y1d 5kgw 5krs 5krt 5u1c

(-) Related Entries Specified in the PDB File

5kgw