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(-) Description

Title :  SOLUTION STRUCTURE OF THE YEAST DDI1 HDD DOMAIN
 
Authors :  J. -F. Trempe, C. Ratcliffe, V. Veverka, K. Saskova, K. Gehring
Date :  10 Jun 16  (Deposition) - 05 Oct 16  (Release) - 05 Oct 16  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
NMR Structure *:  A  (1x)
Keywords :  Helical Bundles, Dna Repair, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. F. Trempe, K. G. Saskova, M. Siva, C. D. Ratcliffe, V. Veverka, A. Hoegl, M. Menade, X. Feng, S. Shenker, M. Svoboda, M. Kozisek, J. Konvalinka, K. Gehring
Structural Studies Of The Yeast Dna Damage-Inducible Protei Ddi1 Reveal Domain Architecture Of This Eukaryotic Protein Family.
Sci Rep V. 6 33671 2016
PubMed-ID: 27646017  |  Reference-DOI: 10.1038/SREP33671

(-) Compounds

Molecule 1 - DNA DAMAGE-INDUCIBLE PROTEIN 1
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI K-12
    Expression System Plasmid: PGEX-6P1
    Expression System Strain: K12
    Expression System Taxid: 83333
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 86-196
    Gene: DDI1, VSM1, YER143W
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 559292
    Strain: ATCC 204508 / S288C
    Synonym: V-SNARE-MASTER 1

 Structural Features

(-) Chains, Units

  1
NMR Structure (20x): A
NMR Structure * (1x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

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 Sequence-Structure Mapping

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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Chain A from PDB  Type:PROTEIN  Length:116
                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------- Transcript
                 5kes A  81 GPLGSATLSDEAFIEQFRQELLNNQMLRSQLILQIPGLNDLVNDPLLFRERLGPLILQRRYGGYNTAMNPFGIPQDEYTRLMANPDDPDNKKRIAELLDQQAIDEQLRNAIEYTPE 196
                                    90       100       110       120       130       140       150       160       170       180       190
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 Classification and Annotation

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(-) Gene Ontology  (13, 13)

NMR Structure(hide GO term definitions)

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  5kes
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  DDI1_YEAST | P40087
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        DDI1_YEAST | P40087: 2i1a 2mr9 2mro 2mrp 2mws 2n7e 4z2z

(-) Related Entries Specified in the PDB File

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