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(-) Description

Title :  NMR SOLUTION STRUCTURE OF THE UBIQUITIN LIKE DOMAIN (UBL) OF DNA-DAMAGE-INDUCIBLE 1 PROTEIN (DDI1)
 
Authors :  U. Nowicka, D. Fushman, T. Chen
Date :  14 Jul 14  (Deposition) - 11 Mar 15  (Release) - 18 Mar 15  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (10x)
NMR Structure *:  A  (1x)
Keywords :  Dna-Damage-Inducible 1 Protein, Ddi1, Ubiquitin Like Domain, Ubl, Ubiquitin Binding, Ubiquitin-Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  U. Nowicka, D. Zhang, O. Walker, D. Krutauz, C. A. Castaneda, A. Chaturvedi, T. Y. Chen, N. Reis, M. H. Glickman, D. Fushman
Dna-Damage-Inducible 1 Protein (Ddi1) Contains An Uncharacteristic Ubiquitin-Like Domain That Binds Ubiquitin
Structure V. 23 542 2015
PubMed-ID: 25703377  |  Reference-DOI: 10.1016/J.STR.2015.01.010

(-) Compounds

Molecule 1 - DNA DAMAGE-INDUCIBLE PROTEIN 1
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: M15
    Expression System Taxid: 562
    Expression System Vector: PQE30
    Fragment: UBIQUITIN LIKE DOMAIN OF DNA-DAMAGE-INDUCIBLE 1 PROTEIN (DDI1UBL)
    Gene: DDI1, VSM1, YER143W
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 559292
    Strain: ATCC 204508 / S288C
    Synonym: V-SNARE-MASTER 1

 Structural Features

(-) Chains, Units

  1
NMR Structure (10x): A
NMR Structure * (1x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

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 Sequence-Structure Mapping

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:79
                                                                                                              
               SCOP domains ------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee....eeeee........hhhhhhhhhh.....hhh.eeee..ee........hhhh......eeeee...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------- Transcript
                  2mrp A  2 DLTISNELTGEIYGPIEVSEDMALTDLIALLQADCGFDKTKHDLYYNMDILDSNRTQSLKELGLKTDDLLLIRGKISNS 80
                                    11        21        31        41        51        61        71
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 Classification and Annotation

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(-) Gene Ontology  (13, 13)

NMR Structure(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        DDI1_YEAST | P40087: 2i1a 2mr9 2mro 2mws 2n7e 4z2z 5kes

(-) Related Entries Specified in the PDB File

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