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(-) Description

Title :  THE CRYSTAL STRUCTURE OF AN ALPHA-MANNOSIDASE FROM ENTEROCOCCUS FAECALIS V583
 
Authors :  K. Tan, G. Chhor, R. Jedrzejczak, W. F. Anderson, A. Joachimiak, Center Structural Genomics Of Infectious Diseases (Csgid)
Date :  03 Jun 16  (Deposition) - 13 Jul 16  (Release) - 13 Jul 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Structural Genomics, The Center For Structural Genomics Of Infectious Diseases, Csgid, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Tan, G. Chhor, R. Jedrzejczak, W. F. Anderson, A. Joachimiak
The Crystal Structure Of An Alpha-Mannosidase From Enterococcus Faecalis V583
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - GLYCOSYL HYDROLASE, FAMILY 38
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21(DE3)MAGIC
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: EF_1707
    Organism Scientific: ENTEROCOCCUS FAECALIS (STRAIN ATCC 700802 / V583)
    Organism Taxid: 226185
    Strain: ATCC 700802 / V583

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 24)

Asymmetric/Biological Unit (1, 24)
No.NameCountTypeFull Name
1SO424Ligand/IonSULFATE ION

(-) Sites  (23, 23)

Asymmetric Unit (23, 23)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREARG A:65 , LYS A:68binding site for residue SO4 A 901
02AC2SOFTWAREGLU A:398 , LYS A:399 , ARG A:807binding site for residue SO4 A 902
03AC3SOFTWARELYS A:69 , LYS A:73 , LYS B:69binding site for residue SO4 A 903
04AC4SOFTWARELYS A:309 , ASN A:373 , HIS A:377binding site for residue SO4 A 904
05AC5SOFTWAREARG A:385 , GLN A:386binding site for residue SO4 A 905
06AC6SOFTWAREHIS A:808 , GLU A:809binding site for residue SO4 A 906
07AC7SOFTWAREARG A:786 , PHE A:787 , THR A:848 , ALA A:849 , GLN A:850binding site for residue SO4 A 907
08AC8SOFTWAREGLU A:398 , ARG A:807binding site for residue SO4 A 908
09AC9SOFTWARELYS A:555binding site for residue SO4 A 909
10AD1SOFTWAREASP A:472 , LEU A:473binding site for residue SO4 A 910
11AD2SOFTWAREASP B:614 , GLU B:615 , SER B:635 , THR B:636binding site for residue SO4 B 901
12AD3SOFTWAREARG B:385 , GLN B:386 , HOH B:1055binding site for residue SO4 B 902
13AD4SOFTWAREARG B:65binding site for residue SO4 B 903
14AD5SOFTWARELYS B:309 , ASN B:373 , HIS B:377binding site for residue SO4 B 905
15AD6SOFTWAREGLU B:398 , LYS B:399 , ARG B:807binding site for residue SO4 B 906
16AD7SOFTWAREARG B:807binding site for residue SO4 B 907
17AD8SOFTWAREASP B:472 , LEU B:473 , HOH B:1001binding site for residue SO4 B 908
18AD9SOFTWARELYS B:592 , GLN B:602 , LYS B:604binding site for residue SO4 B 909
19AE1SOFTWAREARG B:639binding site for residue SO4 B 910
20AE2SOFTWAREARG B:639 , HOH B:1056binding site for residue SO4 B 911
21AE3SOFTWAREARG B:786 , PHE B:787 , THR B:848 , ALA B:849 , GLN B:850binding site for residue SO4 B 912
22AE4SOFTWAREHIS B:808 , GLU B:809binding site for residue SO4 B 913
23AE5SOFTWAREILE B:580 , THR B:581 , ASN B:584binding site for residue SO4 B 914

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5KBP)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Gly A:84 -Pro A:85
2Thr A:875 -Pro A:876
3Gly B:84 -Pro B:85
4Thr B:875 -Pro B:876

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5KBP)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5KBP)

(-) Exons   (0, 0)

(no "Exon" information available for 5KBP)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:886
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee..........hhhhhhhhhhhhhhhhhhhhhhh.....ee....hhhhhhhhh.hhhhhhhhhhhhhh..ee.............hhhhhhhhhhhhhhhhhhhh.....eee........hhhhhhhh....eeee....ee.....ee...eeeee.....eeeeee.............hhhhhhhhhhhhhhhhhh.....eeeeee.........hhhhhhhhhhhhh..eeeee.hhhhhhhhhhhhh.....eee.............hhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh..hhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeeeee.....eeeeeeeeeeeeeee.hhhhhhhhhhhhhhh....eeee.....ee.eeeeeeeeeeeee.......eeeeeeeeeeeeeeeee...eeeeeeeee...........ee....eee...eeeee.....eeeee.....eeeee.eeeeee................ee......eeeeeee...eeeeeeeeeeeee....hhhhhhhhh..hhhhh.......eeeeeeeeeeeee.....eeeeeeeee....eeeeeeee......eeeee....eeeee.............ee...eeeee....eeeeee....eeee....eeeeeeeee...........hhhhhh.eeeeeeeeeeee.hhhhhhhhhhhhhhhh...eeee...........ee........eeeeeeee......eeeeeee..........ee..ee..eee.....................eeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5kbp A   3 KKKVYIVSHSHWDREWYLPYEEHHMRLIELVDNVLDLIENDPEFNSFHLDGQTIILDDYLQVRPEKKEAVKKAVQAGKLKIGPFYILQDDFLISSESNVRNMLIGHLESQKWGAPVQLGYFPDTFGNMGQTPQMMQLANLPAAAFGRGVKPIGFDYSSQYSEMWWEGPDQTKIFGLLFANWYSNGNEIPSEKEAAIAFWKQKLADVERYASTNHLLMMNGVDHQPVQRDITKAIALANELFPEYEFIHSNFDDYLKAVQEELPEDLGTVTGELTSQETDGWYTLANTSSARVYLKQWNTKVQRQLENIAEPLAAMAYEVTGDYPHDQFDYAWKTLLQNHPHDSICGCSVDEVHRGMMTRFENANDVGHFLADEATRQLTEAIDTSVFPEKAHPFVLFNTSGYQKTEVVTVEVEIERLPFYTGKPEDLYHELKQKATPDYQVIDPTGKAVASRIVKEDVRFGYDLPKDAFRQPYMAKYLTVELSVKEMAPFSWDSFALIQGETKAFEGSLLAQPATNEMENEFIQVKIENNGSLTIADKKTGETFSKLLTFEDTGDIGNEYIFFKPTEDQGITTENVTAEITNKENSPVKASYQIKQTVMLPVAADERLEEEQKAVREFRERLAQRSTTLRPFEITTMVTMIKESNQLFFETTINNQIKDHRLRVLFPTGMVTETHEADSIYEVVTRPNQVSDTWENPTNPQHQQAFVNVHDQNKGVTIFNEGLNEYEVLADGTIAVTLIRCVGELGDWGYFATPEAQCQGEYTFKYGLSLHGKPEERFATYQQAYSAQIPFTAATTARHEGKLAPNHVYLTHAEGPIGWTAVKRQEQTNHLVVRGFNLTAQNIPCELHKETQPATCLTNVLEEPLTPAIEVDAPLRPFEIRTWRFE 895
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152   ||  169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539       549       559       569       579       589       599       609       619       629       639       649       659       669       679       689       699       709       719       729       739       749       759       769       779       789       799       809       819       829       839       849       859       869       879       889      
                                                                                                                                                                                   156|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
                                                                                                                                                                                    164                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           


Chain B from PDB  Type:PROTEIN  Length:884
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee.........hhhhhhhhhhhhhhhhhhhhhhh.....ee....hhhhhhhhh.hhhhhhhhhhhhhh..ee.............hhhhhhhhhhhhhhhhh........eee........hhhhhhhh....eeee....ee....ee...eeeee.....eeeeee..hhhhh......hhhhhhhhhhhhhhhhhh.....eeeeee.........hhhhhhhhhhhhh...eeee.hhhhhhhhhh........eee.............hhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh..hhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeeeee.....eeeeeeeeeeeeeee...hhhhhhhhhhhh....eeee.....ee.eeeeeeeeeeeee.......eeeeeeeeeeeeeeeee...eeeeeeeee...........ee....eee...eeeee.....eeeee.....eeeee.eeeeee................ee......eeeeeee...eeeeeeeeeeeee....hhhhhhhhh..hhhhh.......eeeeeeeeeeeee.....eeeeeeeee....eeeeeeee......eeeee....eeeee.............ee...eeeee....eeeeeee...eeee....eeeeeeeee...........hhhhhh.eeeeeeeeeeee.hhhhhhhhhhhhhhhh...eeee...........ee........eeeeeeee......eeeeeee..........ee..ee..eee.....................eeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5kbp B   3 KKKVYIVSHSHWDREWYLPYEEHHMRLIELVDNVLDLIENDPEFNSFHLDGQTIILDDYLQVRPEKKEAVKKAVQAGKLKIGPFYILQDDFLISSESNVRNMLIGHLESQKWGAPVQLGYFPDTFGNMGQTPQMMQLANLPAAAFGRGVKPISDYSSQYSEMWWEGPDQTKIFGLLFANWYSNGNEIPSEKEAAIAFWKQKLADVERYASTNHLLMMNGVDHQPVQRDITKAIALANELFPEYEFIHSNFDDYLKAVQEELPEDLGTVTGELTSQETDGWYTLANTSSARVYLKQWNTKVQRQLENIAEPLAAMAYEVTGDYPHDQFDYAWKTLLQNHPHDSICGCSVDEVHRGMMTRFENANDVGHFLADEATRQLTEAIDTSVFPEKAHPFVLFNTSGYQKTEVVTVEVEIERLPFYGKPEDLYHELKQKATPDYQVIDPTGKAVASRIVKEDVRFGYDLPKDAFRQPYMAKYLTVELSVKEMAPFSWDSFALIQGETKAFEGSLLAQPATNEMENEFIQVKIENNGSLTIADKKTGETFSKLLTFEDTGDIGNEYIFFKPTEDQGITTENVTAEITNKENSPVKASYQIKQTVMLPVAADERLEEEQKAVREFRERLAQRSTTLRPFEITTMVTMIKESNQLFFETTINNQIKDHRLRVLFPTGMVTETHEADSIYEVVTRPNQVSDTWENPTNPQHQQAFVNVHDQNKGVTIFNEGLNEYEVLADGTIAVTLIRCVGELGDWGYFATPEAQCQGEYTFKYGLSLHGKPEERFATYQQAYSAQIPFTAATTARHEGKLAPNHVYLTHAEGPIGWTAVKRQEQTNHLVVRGFNLTAQNIPCELHKETQPATCLTNVLEEPLTPAIEVDAPLRPFEIRTWRFE 895
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152 ||    170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731       741       751       761       771       781       791       801       811       821       831       841       851       861       871       881       891    
                                                                                                                                                                                 154|                                                                                                                                                                                                                                                                       429|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
                                                                                                                                                                                  163                                                                                                                                                                                                                                                                        431
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5KBP)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5KBP)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5KBP)

(-) Gene Ontology  (10, 10)

Asymmetric/Biological Unit(hide GO term definitions)

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        Q834E8_ENTFA | Q834E8: 3lvt

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