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Sequence, Chains, Asymmetric and Biological Units

Title THE CRYSTAL STRUCTURE OF AN ALPHA-MANNOSIDASE FROM ENTEROCOC FAECALIS V583
Keywords STRUCTURAL GENOMICS, THE CENTER FOR STRUCTURAL GENOMICS OF I DISEASES, CSGID, HYDROLASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   5KBP     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   GLYCOSYL HYDROLASE, FAMILY 38  A 886 7065 0
2  Protein   GLYCOSYL HYDROLASE, FAMILY 38  B 884 7040 0
3  Ligand   GLYCOSYL HYDROLASE, FAMILY 38  A 10 0 50
4  Ligand   GLYCOSYL HYDROLASE, FAMILY 38  B 14 0 70
5 Water     265 0 265
total       2059 14105 385
Proteins
Unit 1 LYS3 LYS4 LYS5 VAL6 TYR7 ILE8 VAL9 SER10 HIS11 SER12 HIS13 TRP14 ASP15 ARG16 GLU17 TRP18 TYR19 LEU20 PRO21 TYR22 GLU23 GLU24 HIS25 HIS26 MET27 ARG28 LEU29 ILE30 GLU31 LEU32 VAL33 ASP34 ASN35 VAL36 LEU37 ASP38 LEU39 ILE40 GLU41 ASN42 ASP43 PRO44 GLU45 PHE46 ASN47 SER48 PHE49 HIS50 LEU51 ASP52 GLY53 GLN54 THR55 ILE56 ILE57 LEU58 ASP59 ASP60 TYR61 LEU62 GLN63 VAL64 ARG65 PRO66 GLU67 LYS68 LYS69 GLU70 ALA71 VAL72 LYS73 LYS74 ALA75 VAL76 GLN77 ALA78 GLY79 LYS80 LEU81 LYS82 ILE83 GLY84 PRO85 PHE86 TYR87 ILE88 LEU89 GLN90 ASP91 ASP92 PHE93 LEU94 ILE95 SER96 SER97 GLU98 SER99 ASN100 VAL101 ARG102 ASN103 MET104 LEU105 ILE106 GLY107 HIS108 LEU109 GLU110 SER111 GLN112 LYS113 TRP114 GLY115 ALA116 PRO117 VAL118 GLN119 LEU120 GLY121 TYR122 PHE123 PRO124 ASP125 THR126 PHE127 GLY128 ASN129 MET130 GLY131 GLN132 THR133 PRO134 GLN135 MET136 MET137 GLN138 LEU139 ALA140 ASN141 LEU142 PRO143 ALA144 ALA145 ALA146 PHE147 GLY148 ARG149 GLY150 VAL151 LYS152 PRO153 ILE154 GLY155 PHE156 ASP164 TYR165 SER166 SER167 GLN168 TYR169 SER170 GLU171 MET172 TRP173 TRP174 GLU175 GLY176 PRO177 ASP178 GLN179 THR180 LYS181 ILE182 PHE183 GLY184 LEU185 LEU186 PHE187 ALA188 ASN189 TRP190 TYR191 SER192 ASN193 GLY194 ASN195 GLU196 ILE197 PRO198 SER199 GLU200 LYS201 GLU202 ALA203 ALA204 ILE205 ALA206 PHE207 TRP208 LYS209 GLN210 LYS211 LEU212 ALA213 ASP214 VAL215 GLU216 ARG217 TYR218 ALA219 SER220 THR221 ASN222 HIS223 LEU224 LEU225 MET226 MET227 ASN228 GLY229 VAL230 ASP231 HIS232 GLN233 PRO234 VAL235 GLN236 ARG237 ASP238 ILE239 THR240 LYS241 ALA242 ILE243 ALA244 LEU245 ALA246 ASN247 GLU248 LEU249 PHE250 PRO251 GLU252 TYR253 GLU254 PHE255 ILE256 HIS257 SER258 ASN259 PHE260 ASP261 ASP262 TYR263 LEU264 LYS265 ALA266 VAL267 GLN268 GLU269 GLU270 LEU271 PRO272 GLU273 ASP274 LEU275 GLY276 THR277 VAL278 THR279 GLY280 GLU281 LEU282 THR283 SER284 GLN285 GLU286 THR287 ASP288 GLY289 TRP290 TYR291 THR292 LEU293 ALA294 ASN295 THR296 SER297 SER298 ALA299 ARG300 VAL301 TYR302 LEU303 LYS304 GLN305 TRP306 ASN307 THR308 LYS309 VAL310 GLN311 ARG312 GLN313 LEU314 GLU315 ASN316 ILE317 ALA318 GLU319 PRO320 LEU321 ALA322 ALA323 MET324 ALA325 TYR326 GLU327 VAL328 THR329 GLY330 ASP331 TYR332 PRO333 HIS334 ASP335 GLN336 PHE337 ASP338 TYR339 ALA340 TRP341 LYS342 THR343 LEU344 LEU345 GLN346 ASN347 HIS348 PRO349 HIS350 ASP351 SER352 ILE353 CYS354 GLY355 CYS356 SER357 VAL358 ASP359 GLU360 VAL361 HIS362 ARG363 GLY364 MET365 MET366 THR367 ARG368 PHE369 GLU370 ASN371 ALA372 ASN373 ASP374 VAL375 GLY376 HIS377 PHE378 LEU379 ALA380 ASP381 GLU382 ALA383 THR384 ARG385 GLN386 LEU387 THR388 GLU389 ALA390 ILE391 ASP392 THR393 SER394 VAL395 PHE396 PRO397 GLU398 LYS399 ALA400 HIS401 PRO402 PHE403 VAL404 LEU405 PHE406 ASN407 THR408 SER409 GLY410 TYR411 GLN412 LYS413 THR414 GLU415 VAL416 VAL417 THR418 VAL419 GLU420 VAL421 GLU422 ILE423 GLU424 ARG425 LEU426 PRO427 PHE428 TYR429 THR430 GLY431 LYS432 PRO433 GLU434 ASP435 LEU436 TYR437 HIS438 GLU439 LEU440 LYS441 GLN442 LYS443 ALA444 THR445 PRO446 ASP447 TYR448 GLN449 VAL450 ILE451 ASP452 PRO453 THR454 GLY455 LYS456 ALA457 VAL458 ALA459 SER460 ARG461 ILE462 VAL463 LYS464 GLU465 ASP466 VAL467 ARG468 PHE469 GLY470 TYR471 ASP472 LEU473 PRO474 LYS475 ASP476 ALA477 PHE478 ARG479 GLN480 PRO481 TYR482 MET483 ALA484 LYS485 TYR486 LEU487 THR488 VAL489 GLU490 LEU491 SER492 VAL493 LYS494 GLU495 MET496 ALA497 PRO498 PHE499 SER500 TRP501 ASP502 SER503 PHE504 ALA505 LEU506 ILE507 GLN508 GLY509 GLU510 THR511 LYS512 ALA513 PHE514 GLU515 GLY516 SER517 LEU518 LEU519 ALA520 GLN521 PRO522 ALA523 THR524 ASN525 GLU526 MET527 GLU528 ASN529 GLU530 PHE531 ILE532 GLN533 VAL534 LYS535 ILE536 GLU537 ASN538 ASN539 GLY540 SER541 LEU542 THR543 ILE544 ALA545 ASP546 LYS547 LYS548 THR549 GLY550 GLU551 THR552 PHE553 SER554 LYS555 LEU556 LEU557 THR558 PHE559 GLU560 ASP561 THR562 GLY563 ASP564 ILE565 GLY566 ASN567 GLU568 TYR569 ILE570 PHE571 PHE572 LYS573 PRO574 THR575 GLU576 ASP577 GLN578 GLY579 ILE580 THR581 THR582 GLU583 ASN584 VAL585 THR586 ALA587 GLU588 ILE589 THR590 ASN591 LYS592 GLU593 ASN594 SER595 PRO596 VAL597 LYS598 ALA599 SER600 TYR601 GLN602 ILE603 LYS604 GLN605 THR606 VAL607 MET608 LEU609 PRO610 VAL611 ALA612 ALA613 ASP614 GLU615 ARG616 LEU617 GLU618 GLU619 GLU620 GLN621 LYS622 ALA623 VAL624 ARG625 GLU626 PHE627 ARG628 GLU629 ARG630 LEU631 ALA632 GLN633 ARG634 SER635 THR636 THR637 LEU638 ARG639 PRO640 PHE641 GLU642 ILE643 THR644 THR645 MET646 VAL647 THR648 MET649 ILE650 LYS651 GLU652 SER653 ASN654 GLN655 LEU656 PHE657 PHE658 GLU659 THR660 THR661 ILE662 ASN663 ASN664 GLN665 ILE666 LYS667 ASP668 HIS669 ARG670 LEU671 ARG672 VAL673 LEU674 PHE675 PRO676 THR677 GLY678 MET679 VAL680 THR681 GLU682 THR683 HIS684 GLU685 ALA686 ASP687 SER688 ILE689 TYR690 GLU691 VAL692 VAL693 THR694 ARG695 PRO696 ASN697 GLN698 VAL699 SER700 ASP701 THR702 TRP703 GLU704 ASN705 PRO706 THR707 ASN708 PRO709 GLN710 HIS711 GLN712 GLN713 ALA714 PHE715 VAL716 ASN717 VAL718 HIS719 ASP720 GLN721 ASN722 LYS723 GLY724 VAL725 THR726 ILE727 PHE728 ASN729 GLU730 GLY731 LEU732 ASN733 GLU734 TYR735 GLU736 VAL737 LEU738 ALA739 ASP740 GLY741 THR742 ILE743 ALA744 VAL745 THR746 LEU747 ILE748 ARG749 CYS750 VAL751 GLY752 GLU753 LEU754 GLY755 ASP756 TRP757 GLY758 TYR759 PHE760 ALA761 THR762 PRO763 GLU764 ALA765 GLN766 CYS767 GLN768 GLY769 GLU770 TYR771 THR772 PHE773 LYS774 TYR775 GLY776 LEU777 SER778 LEU779 HIS780 GLY781 LYS782 PRO783 GLU784 GLU785 ARG786 PHE787 ALA788 THR789 TYR790 GLN791 GLN792 ALA793 TYR794 SER795 ALA796 GLN797 ILE798 PRO799 PHE800 THR801 ALA802 ALA803 THR804 THR805 ALA806 ARG807 HIS808 GLU809 GLY810 LYS811 LEU812 ALA813 PRO814 ASN815 HIS816 VAL817 TYR818 LEU819 THR820 HIS821 ALA822 GLU823 GLY824 PRO825 ILE826 GLY827 TRP828 THR829 ALA830 VAL831 LYS832 ARG833 GLN834 GLU835 GLN836 THR837 ASN838 HIS839 LEU840 VAL841 VAL842 ARG843 GLY844 PHE845 ASN846 LEU847 THR848 ALA849 GLN850 ASN851 ILE852 PRO853 CYS854 GLU855 LEU856 HIS857 LYS858 GLU859 THR860 GLN861 PRO862 ALA863 THR864 CYS865 LEU866 THR867 ASN868 VAL869 LEU870 GLU871 GLU872 PRO873 LEU874 THR875 PRO876 ALA877 ILE878 GLU879 VAL880 ASP881 ALA882 PRO883 LEU884 ARG885 PRO886 PHE887 GLU888 ILE889 ARG890 THR891 TRP892 ARG893 PHE894 GLU895
Unit 2 LYS3 LYS4 LYS5 VAL6 TYR7 ILE8 VAL9 SER10 HIS11 SER12 HIS13 TRP14 ASP15 ARG16 GLU17 TRP18 TYR19 LEU20 PRO21 TYR22 GLU23 GLU24 HIS25 HIS26 MET27 ARG28 LEU29 ILE30 GLU31 LEU32 VAL33 ASP34 ASN35 VAL36 LEU37 ASP38 LEU39 ILE40 GLU41 ASN42 ASP43 PRO44 GLU45 PHE46 ASN47 SER48 PHE49 HIS50 LEU51 ASP52 GLY53 GLN54 THR55 ILE56 ILE57 LEU58 ASP59 ASP60 TYR61 LEU62 GLN63 VAL64 ARG65 PRO66 GLU67 LYS68 LYS69 GLU70 ALA71 VAL72 LYS73 LYS74 ALA75 VAL76 GLN77 ALA78 GLY79 LYS80 LEU81 LYS82 ILE83 GLY84 PRO85 PHE86 TYR87 ILE88 LEU89 GLN90 ASP91 ASP92 PHE93 LEU94 ILE95 SER96 SER97 GLU98 SER99 ASN100 VAL101 ARG102 ASN103 MET104 LEU105 ILE106 GLY107 HIS108 LEU109 GLU110 SER111 GLN112 LYS113 TRP114 GLY115 ALA116 PRO117 VAL118 GLN119 LEU120 GLY121 TYR122 PHE123 PRO124 ASP125 THR126 PHE127 GLY128 ASN129 MET130 GLY131 GLN132 THR133 PRO134 GLN135 MET136 MET137 GLN138 LEU139 ALA140 ASN141 LEU142 PRO143 ALA144 ALA145 ALA146 PHE147 GLY148 ARG149 GLY150 VAL151 LYS152 PRO153 ILE154 SER163 ASP164 TYR165 SER166 SER167 GLN168 TYR169 SER170 GLU171 MET172 TRP173 TRP174 GLU175 GLY176 PRO177 ASP178 GLN179 THR180 LYS181 ILE182 PHE183 GLY184 LEU185 LEU186 PHE187 ALA188 ASN189 TRP190 TYR191 SER192 ASN193 GLY194 ASN195 GLU196 ILE197 PRO198 SER199 GLU200 LYS201 GLU202 ALA203 ALA204 ILE205 ALA206 PHE207 TRP208 LYS209 GLN210 LYS211 LEU212 ALA213 ASP214 VAL215 GLU216 ARG217 TYR218 ALA219 SER220 THR221 ASN222 HIS223 LEU224 LEU225 MET226 MET227 ASN228 GLY229 VAL230 ASP231 HIS232 GLN233 PRO234 VAL235 GLN236 ARG237 ASP238 ILE239 THR240 LYS241 ALA242 ILE243 ALA244 LEU245 ALA246 ASN247 GLU248 LEU249 PHE250 PRO251 GLU252 TYR253 GLU254 PHE255 ILE256 HIS257 SER258 ASN259 PHE260 ASP261 ASP262 TYR263 LEU264 LYS265 ALA266 VAL267 GLN268 GLU269 GLU270 LEU271 PRO272 GLU273 ASP274 LEU275 GLY276 THR277 VAL278 THR279 GLY280 GLU281 LEU282 THR283 SER284 GLN285 GLU286 THR287 ASP288 GLY289 TRP290 TYR291 THR292 LEU293 ALA294 ASN295 THR296 SER297 SER298 ALA299 ARG300 VAL301 TYR302 LEU303 LYS304 GLN305 TRP306 ASN307 THR308 LYS309 VAL310 GLN311 ARG312 GLN313 LEU314 GLU315 ASN316 ILE317 ALA318 GLU319 PRO320 LEU321 ALA322 ALA323 MET324 ALA325 TYR326 GLU327 VAL328 THR329 GLY330 ASP331 TYR332 PRO333 HIS334 ASP335 GLN336 PHE337 ASP338 TYR339 ALA340 TRP341 LYS342 THR343 LEU344 LEU345 GLN346 ASN347 HIS348 PRO349 HIS350 ASP351 SER352 ILE353 CYS354 GLY355 CYS356 SER357 VAL358 ASP359 GLU360 VAL361 HIS362 ARG363 GLY364 MET365 MET366 THR367 ARG368 PHE369 GLU370 ASN371 ALA372 ASN373 ASP374 VAL375 GLY376 HIS377 PHE378 LEU379 ALA380 ASP381 GLU382 ALA383 THR384 ARG385 GLN386 LEU387 THR388 GLU389 ALA390 ILE391 ASP392 THR393 SER394 VAL395 PHE396 PRO397 GLU398 LYS399 ALA400 HIS401 PRO402 PHE403 VAL404 LEU405 PHE406 ASN407 THR408 SER409 GLY410 TYR411 GLN412 LYS413 THR414 GLU415 VAL416 VAL417 THR418 VAL419 GLU420 VAL421 GLU422 ILE423 GLU424 ARG425 LEU426 PRO427 PHE428 TYR429 GLY431 LYS432 PRO433 GLU434 ASP435 LEU436 TYR437 HIS438 GLU439 LEU440 LYS441 GLN442 LYS443 ALA444 THR445 PRO446 ASP447 TYR448 GLN449 VAL450 ILE451 ASP452 PRO453 THR454 GLY455 LYS456 ALA457 VAL458 ALA459 SER460 ARG461 ILE462 VAL463 LYS464 GLU465 ASP466 VAL467 ARG468 PHE469 GLY470 TYR471 ASP472 LEU473 PRO474 LYS475 ASP476 ALA477 PHE478 ARG479 GLN480 PRO481 TYR482 MET483 ALA484 LYS485 TYR486 LEU487 THR488 VAL489 GLU490 LEU491 SER492 VAL493 LYS494 GLU495 MET496 ALA497 PRO498 PHE499 SER500 TRP501 ASP502 SER503 PHE504 ALA505 LEU506 ILE507 GLN508 GLY509 GLU510 THR511 LYS512 ALA513 PHE514 GLU515 GLY516 SER517 LEU518 LEU519 ALA520 GLN521 PRO522 ALA523 THR524 ASN525 GLU526 MET527 GLU528 ASN529 GLU530 PHE531 ILE532 GLN533 VAL534 LYS535 ILE536 GLU537 ASN538 ASN539 GLY540 SER541 LEU542 THR543 ILE544 ALA545 ASP546 LYS547 LYS548 THR549 GLY550 GLU551 THR552 PHE553 SER554 LYS555 LEU556 LEU557 THR558 PHE559 GLU560 ASP561 THR562 GLY563 ASP564 ILE565 GLY566 ASN567 GLU568 TYR569 ILE570 PHE571 PHE572 LYS573 PRO574 THR575 GLU576 ASP577 GLN578 GLY579 ILE580 THR581 THR582 GLU583 ASN584 VAL585 THR586 ALA587 GLU588 ILE589 THR590 ASN591 LYS592 GLU593 ASN594 SER595 PRO596 VAL597 LYS598 ALA599 SER600 TYR601 GLN602 ILE603 LYS604 GLN605 THR606 VAL607 MET608 LEU609 PRO610 VAL611 ALA612 ALA613 ASP614 GLU615 ARG616 LEU617 GLU618 GLU619 GLU620 GLN621 LYS622 ALA623 VAL624 ARG625 GLU626 PHE627 ARG628 GLU629 ARG630 LEU631 ALA632 GLN633 ARG634 SER635 THR636 THR637 LEU638 ARG639 PRO640 PHE641 GLU642 ILE643 THR644 THR645 MET646 VAL647 THR648 MET649 ILE650 LYS651 GLU652 SER653 ASN654 GLN655 LEU656 PHE657 PHE658 GLU659 THR660 THR661 ILE662 ASN663 ASN664 GLN665 ILE666 LYS667 ASP668 HIS669 ARG670 LEU671 ARG672 VAL673 LEU674 PHE675 PRO676 THR677 GLY678 MET679 VAL680 THR681 GLU682 THR683 HIS684 GLU685 ALA686 ASP687 SER688 ILE689 TYR690 GLU691 VAL692 VAL693 THR694 ARG695 PRO696 ASN697 GLN698 VAL699 SER700 ASP701 THR702 TRP703 GLU704 ASN705 PRO706 THR707 ASN708 PRO709 GLN710 HIS711 GLN712 GLN713 ALA714 PHE715 VAL716 ASN717 VAL718 HIS719 ASP720 GLN721 ASN722 LYS723 GLY724 VAL725 THR726 ILE727 PHE728 ASN729 GLU730 GLY731 LEU732 ASN733 GLU734 TYR735 GLU736 VAL737 LEU738 ALA739 ASP740 GLY741 THR742 ILE743 ALA744 VAL745 THR746 LEU747 ILE748 ARG749 CYS750 VAL751 GLY752 GLU753 LEU754 GLY755 ASP756 TRP757 GLY758 TYR759 PHE760 ALA761 THR762 PRO763 GLU764 ALA765 GLN766 CYS767 GLN768 GLY769 GLU770 TYR771 THR772 PHE773 LYS774 TYR775 GLY776 LEU777 SER778 LEU779 HIS780 GLY781 LYS782 PRO783 GLU784 GLU785 ARG786 PHE787 ALA788 THR789 TYR790 GLN791 GLN792 ALA793 TYR794 SER795 ALA796 GLN797 ILE798 PRO799 PHE800 THR801 ALA802 ALA803 THR804 THR805 ALA806 ARG807 HIS808 GLU809 GLY810 LYS811 LEU812 ALA813 PRO814 ASN815 HIS816 VAL817 TYR818 LEU819 THR820 HIS821 ALA822 GLU823 GLY824 PRO825 ILE826 GLY827 TRP828 THR829 ALA830 VAL831 LYS832 ARG833 GLN834 GLU835 GLN836 THR837 ASN838 HIS839 LEU840 VAL841 VAL842 ARG843 GLY844 PHE845 ASN846 LEU847 THR848 ALA849 GLN850 ASN851 ILE852 PRO853 CYS854 GLU855 LEU856 HIS857 LYS858 GLU859 THR860 GLN861 PRO862 ALA863 THR864 CYS865 LEU866 THR867 ASN868 VAL869 LEU870 GLU871 GLU872 PRO873 LEU874 THR875 PRO876 ALA877 ILE878 GLU879 VAL880 ASP881 ALA882 PRO883 LEU884 ARG885 PRO886 PHE887 GLU888 ILE889 ARG890 THR891 TRP892 ARG893 PHE894 GLU895
Ligands
Unit 3 SO4901 SO4902 SO4903 SO4904 SO4905 SO4906 SO4907 SO4908 SO4909 SO4910
Unit 4 SO4901 SO4902 SO4903 SO4904 SO4905 SO4906 SO4907 SO4908 SO4909 SO4910 SO4911 SO4912 SO4913 SO4914
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany