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(-) Description

Title :  CRYSTAL STRUCTURE OF MOUSE CARM1 IN COMPLEX WITH INHIBITOR U3
 
Authors :  V. Cura, N. Marechal, J. Mailliot, N. Troffer-Charlier, P. Hassenboeh J. M. Wurtz, L. Bonnefond, J. Cavarelli
Date :  31 May 16  (Deposition) - 21 Jun 17  (Release) - 21 Jun 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.99
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Protein Arginine Methyltransferase, Catalytic Domain, Chromatin Regulator, Mrna Processing, Mrna Splicing, Nucleus, S-Adenosyl-L- Methionine, Transcription, Transcription Regulation, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  V. Cura, N. Marechal, J. Mailliot, N. Troffer-Charlier, J. M. Wurtz, L. Bonnefond, J. Cavarelli
Crystal Structure Of Mouse Carm1 In Complex With Inhibitor U3
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HISTONE-ARGININE METHYLTRANSFERASE CARM1
    Chains: A, B, C, D
    EC Number: 2.1.1.319
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Common: FALL ARMYWORM
    Expression System Taxid: 7108
    Gene: CARM1, PRMT4
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Synonym: COACTIVATOR-ASSOCIATED ARGININE METHYLTRANSFERASE 1,PROTEIN ARGININE N-METHYLTRANSFERASE 4

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (7, 32)

Asymmetric/Biological Unit (7, 32)
No.NameCountTypeFull Name
16ZH4Ligand/Ion[[[(~{E})-3-[(2~{R},3~{S},4~{R},5~{R})-5-(6-AMINOPURIN-9-YL)-3,4-BIS(OXIDANYL)OXOLAN-2-YL]PROP-2-ENYL]AMINO]-AZANYL-METHYLIDENE]AZANIUM
2DXE6Ligand/Ion1,2-DIMETHOXYETHANE
3EDO14Ligand/Ion1,2-ETHANEDIOL
4M2M1Ligand/Ion1-METHOXY-2-(2-METHOXYETHOXY)ETHANE
5PE81Ligand/Ion3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL
6PEG5Ligand/IonDI(HYDROXYETHYL)ETHER
7PG41Ligand/IonTETRAETHYLENE GLYCOL

(-) Sites  (28, 28)

Asymmetric Unit (28, 28)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETYR A:150 , PHE A:151 , TYR A:154 , GLY A:193 , GLU A:215 , ALA A:216 , GLY A:241 , LYS A:242 , VAL A:243 , GLU A:244 , GLU A:258 , MET A:260 , GLU A:267 , MET A:269 , SER A:272 , PG4 A:508 , HOH A:624 , HOH A:663 , HOH A:686binding site for residue 6ZH A 501
02AC2SOFTWARETRP A:404binding site for residue EDO A 502
03AC3SOFTWARELEU A:413 , THR A:414 , TYR A:417 , HOH A:678 , HOH A:771binding site for residue EDO A 503
04AC4SOFTWAREPHE A:153 , GLN A:159binding site for residue EDO A 504
05AC5SOFTWAREGLU A:144 , LYS A:242 , HOH A:625binding site for residue EDO A 505
06AC6SOFTWARESER A:283 , GLY A:398 , SER A:399binding site for residue PEG A 506
07AC7SOFTWARELYS A:277 , LEU A:280 , PRO A:282 , HOH A:608binding site for residue PEG A 507
08AC8SOFTWAREPHE A:153 , TYR A:262 , GLU A:267 , HIS A:415 , TRP A:416 , 6ZH A:501binding site for residue PG4 A 508
09AC9SOFTWAREGLN A:456 , LYS A:463 , HOH A:631 , SER B:136 , GLU B:244 , GLU B:245 , SER B:247 , GLN B:251 , TYR B:279 , HOH B:670binding site for residue PE8 A 509
10AD1SOFTWARETYR B:150 , PHE B:151 , TYR B:154 , GLY B:193 , GLU B:215 , ALA B:216 , GLY B:241 , LYS B:242 , VAL B:243 , GLU B:244 , GLU B:258 , GLU B:267 , MET B:269 , SER B:272 , HOH B:611 , HOH B:645 , HOH B:659 , HOH B:681binding site for residue 6ZH B 501
11AD2SOFTWAREALA B:147 , LYS B:242binding site for residue EDO B 502
12AD3SOFTWAREASP B:458 , HOH B:607 , LEU C:178 , GLN C:205binding site for residue EDO B 503
13AD4SOFTWAREHIS B:415binding site for residue EDO B 504
14AD5SOFTWAREGLU B:267binding site for residue DXE B 506
15AD6SOFTWARETYR C:150 , PHE C:151 , TYR C:154 , GLY C:193 , GLU C:215 , ALA C:216 , GLY C:241 , LYS C:242 , VAL C:243 , GLU C:244 , GLU C:258 , MET C:260 , GLU C:267 , MET C:269 , SER C:272 , HOH C:614 , HOH C:674 , HOH C:688binding site for residue 6ZH C 501
16AD7SOFTWARETHR C:410 , HOH C:761binding site for residue EDO C 502
17AD8SOFTWAREGLY C:284 , GLY C:398 , SER C:399binding site for residue PEG C 504
18AD9SOFTWAREASP C:333 , GLN C:424 , HOH C:661binding site for residue PEG C 505
19AE1SOFTWARETRP C:404 , HOH C:625binding site for residue PEG C 506
20AE2SOFTWARELYS C:277 , LEU C:280 , PRO C:282 , LEU C:361 , HOH C:706binding site for residue DXE C 507
21AE3SOFTWAREPHE B:428 , GLN C:165 , GLN D:316 , EDO D:503binding site for residue DXE C 508
22AE4SOFTWAREPHE C:153 , GLN C:159 , ASN D:472binding site for residue DXE C 509
23AE5SOFTWARETYR C:262 , GLU C:267binding site for residue M2M C 510
24AE6SOFTWARETYR D:150 , PHE D:151 , TYR D:154 , GLY D:193 , GLU D:215 , ALA D:216 , GLY D:241 , LYS D:242 , VAL D:243 , GLU D:244 , GLU D:258 , MET D:260 , GLU D:267 , MET D:269 , SER D:272 , HOH D:619 , HOH D:663 , HOH D:682binding site for residue 6ZH D 501
25AE7SOFTWARETRP D:404binding site for residue EDO D 502
26AE8SOFTWAREDXE C:508binding site for residue EDO D 503
27AE9SOFTWAREPRO D:409 , THR D:410 , GLU D:411binding site for residue EDO D 505
28AF1SOFTWAREASN D:162 , HIS D:415binding site for residue DXE D 507

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5K8X)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Phe A:287 -Pro A:288
2Phe B:287 -Pro B:288
3Phe C:287 -Pro C:288
4Phe D:287 -Pro D:288

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5K8X)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5K8X)

(-) Exons   (0, 0)

(no "Exon" information available for 5K8X)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:343
                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeee....hhhhhhhhhh...eeeeee..hhhhhhhhhhhhh.....eeeee...........eeeeee..........hhhhhhhhh...eeeeeeee..eeeeeeeee.hhhhhhhhhhhhhhhh........hhhhhhhhhhhhhh..eee..hhhhh....eeeeee....hhhhh.eeeeeeeee....eeeeeeeeeeeeeee....eeeee...........eeeeeeeeeeee....eeeeeeeeeee...eeeeeeeeee.....eeeeeee....ee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5k8x A 136 SVFSERTEESSAVQYFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPTIGDVHLAPFTDEQLYMEQFTKANFWYQPSFHGVDLSALRGAAVDEYFRQPVVDTFDIRILMAKSVKYTVNFLEAKEGDLHRIEIPFKFHMLHSGLVHGLAFWFDVAFIGSIMTVWLSTAPTEPLTHWYQVRCLFQSPLFAKAGDTLSGTCLLIANKRQSYDISIVAQVDQTGSKSSNLLDLKNPFFRYT 478
                                   145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475   


Chain B from PDB  Type:PROTEIN  Length:343
                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeee....hhhhhhhhhh...eeeeee..hhhhhhhhhhhhh.....eeeee...........eeeeee..........hhhhhhhhh...eeeeeeee..eeeeeeeee.hhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhh..eee..hhhhh....eeeeee....hhhhh.eeeeeeeee....eeeeeeeeeeeeeee....eeeee...........eeeeeeeeeeee....eeeeeeeeeee...eeeeeeeeee.....eeeeeee....ee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5k8x B 135 RSVFSERTEESSAVQYFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPTIGDVHLAPFTDEQLYMEQFTKANFWYQPSFHGVDLSALRGAAVDEYFRQPVVDTFDIRILMAKSVKYTVNFLEAKEGDLHRIEIPFKFHMLHSGLVHGLAFWFDVAFIGSIMTVWLSTAPTEPLTHWYQVRCLFQSPLFAKAGDTLSGTCLLIANKRQSYDISIVAQVDQTGSKSSNLLDLKNPFFRY 477
                                   144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474   


Chain C from PDB  Type:PROTEIN  Length:342
                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeee....hhhhhhhhhh...eeeeee..hhhhhhhhhhhhh.....eeeee...........eeeeee..........hhhhhhhhh...eeeeeeee..eeeeeeeee.hhhhhhhhhhhhhhhh........hhhhhhhhhhhhhh..eee..hhhhh....eeeeee....hhhhh.eeeeeeeee....eeeeeeeeeeeeeee....eeeee...........eeeeeeeeeeee....eeeeeeeeeee...eeeeeeeeee.....eeeeeee....ee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5k8x C 136 SVFSERTEESSAVQYFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPTIGDVHLAPFTDEQLYMEQFTKANFWYQPSFHGVDLSALRGAAVDEYFRQPVVDTFDIRILMAKSVKYTVNFLEAKEGDLHRIEIPFKFHMLHSGLVHGLAFWFDVAFIGSIMTVWLSTAPTEPLTHWYQVRCLFQSPLFAKAGDTLSGTCLLIANKRQSYDISIVAQVDQTGSKSSNLLDLKNPFFRY 477
                                   145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475  


Chain D from PDB  Type:PROTEIN  Length:342
                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhh.hhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeee....hhhhhhhhhh...eeeeee..hhhhhhhhhhhhh.....eeeee...........eeeeee..........hhhhhhhhh...eeeeeeee..eeeeeeeee.hhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhh..eee..hhhhh....eeeeee....hhhhh.eeeeeeeee....eeeeeeeeeeeeeee....eeeee...........eeeeeeeeeeee....eeeeeeeeeee...eeeeeeeeee.....eeeeeee....ee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5k8x D 135 RSVFSERTEESSAVQYFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPTIGDVHLAPFTDEQLYMEQFTKANFWYQPSFHGVDLSALRGAAVDEYFRQPVVDTFDIRILMAKSVKYTVNFLEAKEGDLHRIEIPFKFHMLHSGLVHGLAFWFDVAFIGSIMTVWLSTAPTEPLTHWYQVRCLFQSPLFAKAGDTLSGTCLLIANKRQSYDISIVAQVDQTGSKSSNLLDLKNPFFR 476
                                   144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5K8X)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5K8X)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5K8X)

(-) Gene Ontology  (41, 41)

Asymmetric/Biological Unit(hide GO term definitions)

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  CARM1_MOUSE | Q9WVG6
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CARM1_MOUSE | Q9WVG6: 2v74 2v7e 5ih3 5is6 5is7 5is8 5is9 5isa 5isb 5isc 5isd 5ise 5isf 5isg 5ish 5isi 5k8v 5k8w 5lgp 5lgq 5lgr 5lgs

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5K8X)