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(-) Description

Title :  DESIGN AND OPTIMIZATION OF BIARYL ETHER ARYL SULFONAMIDES AS SELECTIVE INHIBITORS OF NAV1.7: DISCOVERY OF CLINICAL CANDIDATE PF-05089771
 
Authors :  N. Swain, J. Chrencik
Date :  26 May 16  (Deposition) - 07 Jun 17  (Release) - 07 Jun 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym./Biol. Unit :  A
Keywords :  Cyp2C9, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. Swain, S. Zhou
Design And Optimization Of Biaryl Ether Aryl Sulfonamides A Selective Inhibitors Of Nav1. 7: Discovery Of Clinical Candidate Pf-05089771
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - CYTOCHROME P450 2C9
    Chains: A
    EC Number: 1.14.13.80
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: CYP2C9, CYP2C10
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: (R)-LIMONENE 6-MONOOXYGENASE,(S)-LIMONENE 6-MONOOXYGENASE, (S)-LIMONENE 7-MONOOXYGENASE,CYPIIC9,CHOLESTEROL 25-HYDROXYLASE, CYTOCHROME P-450MP,CYTOCHROME P450 MP-4,CYTOCHROME P450 MP-8, CYTOCHROME P450 PB-1,S-MEPHENYTOIN 4-HYDROXYLASE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
16RJ1Ligand/Ion4-[4-CHLORANYL-2-(1~{H}-PYRAZOL-4-YL)PHENOXY]-3-CYANO-~{N}-(1,3-THIAZOL-2-YL)BENZENESULFONAMIDE
2HEM1Ligand/IonPROTOPORPHYRIN IX CONTAINING FE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:97 , ILE A:112 , TRP A:120 , ALA A:297 , GLY A:298 , THR A:301 , THR A:302 , THR A:305 , LEU A:361 , LEU A:362 , SER A:365 , HIS A:368 , PRO A:427 , PHE A:428 , SER A:429 , ARG A:433 , CYS A:435 , VAL A:436 , GLY A:437 , ALA A:441 , 6RJ A:502 , HOH A:603binding site for residue HEM A 501
2AC2SOFTWAREARG A:108 , PHE A:114 , LEU A:201 , ILE A:205 , LEU A:208 , MET A:240 , VAL A:292 , GLY A:296 , ALA A:297 , THR A:301 , SER A:365 , LEU A:366 , HEM A:501binding site for residue 6RJ A 502

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5K7K)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Gln A:278 -Pro A:279

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5K7K)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5K7K)

(-) Exons   (0, 0)

(no "Exon" information available for 5K7K)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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Chain A from PDB  Type:PROTEIN  Length:455
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...............hhhhhhhhhhhhhhhhh.eeeeee..eeeeee.hhhhhhhhhh.......ee..................hhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhh.......ee....eee..eee....eeee.hhhhhh...........hhhhhh................hhhhh..hhhhhhhhhhhhhhhhhhheeeee..hhhhh.................eeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5k7k A  26 RGKLPPGPTPLPLQIGIKDISKSLTNLSKVYGPVFTLYFGLKPIVVLHGYEAVKEALIDLGEEFSGRGIFPLAERANRGFGIVFSNGKKWKEIRRFSLMTLRNFGMGKRSIEDRVQEEARCLVEELRKTKASPCDPTFILGCAPCNVICSIIFHKRFDYKDQQFLNLMEKLNENIKILSSPWIPIIDYFPGTHNKLLKNVAFMKSYILEKVKEHQESMDMNNPQDFIDCFLMKMEKEKHNQPSEFTIESLENTAVDLFGAGTETTSTTLRYALLLLLKHPEVTAKVQEEIERVIGRNRSPCMQDRSHMPYTDAVVHEVQRYIDLLPTSLPHAVTCDIKFRNYLIPKGTTILISLTSVLHDNKEFPNPEMFDPHHFLDEGGNFKKSKYFMPFSAGKRICVGEALAGMELFLFLTSILQNFNLKSLVDPKNLDTTPVVNGFASVPPFYQLCFIPIHH 492
                                    35 ||     50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210  ||   227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487     
                                      37|                                                                                                                                                                       213|                                                                                                                                                                                                                                                                               
                                       43                                                                                                                                                                        221
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5K7K)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5K7K)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5K7K)

(-) Gene Ontology  (34, 34)

Asymmetric/Biological Unit(hide GO term definitions)

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        CP2C9_HUMAN | P11712: 1og2 1og5 1r9o 4nz2 5a5i 5a5j

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