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(-) Description

Title :  CYTOCHROME 2C9 P450 INHIBITOR COMPLEX
 
Authors :  S. E. Skerratt, M. J. De Groot, C. Phillips
Date :  18 Jun 15  (Deposition) - 24 Aug 16  (Release) - 24 Aug 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A
Keywords :  Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. E. Skerratt, M. J. De Groot, C. Phillips
Discovery Of A Novel Binding Pocket For Cyp 2C9 Inhibitors: Crystallography, Pharmacophore Modelling And Inhibitor Sar.
Med. Chem. Comm. V. 7 813 2016
PubMed: search  |  Reference-DOI: 10.1039/C6MD00011H

(-) Compounds

Molecule 1 - CYTOCHROME P450 2C9
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 23-489
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: (R)-LIMONENE 6-MONOOXYGENASE, (S)-LIMONENE 6-MONOOXYGENASE, (S)-LIMONENE 7-MONOOXYGENASE, CYPIIC9, CYTOCHROME P-450MP, CYTOCH ROME P450 MP-4, CYTOCHROME P450 MP-8, CYTOCHROME P450 PB-1, S-MEPH ENYTOIN 4-HYDROXYLASE, CYTOCHROME 2C9

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
1HEM1Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
2XI11Ligand/IonN-[4-(3-CHLORANYL-4-CYANO-PHENOXY)CYCLOHEXYL]-1,1,1-TRIS(FLUORANYL)METHANESULFONAMIDE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:108 , ASN A:204 , ILE A:205 , LEU A:208 , VAL A:237 , VAL A:292 , ALA A:297 , THR A:301 , LEU A:362 , HEM A:1494 , HOH A:2007BINDING SITE FOR RESIDUE XI1 A1493
2AC2SOFTWAREARG A:97 , ILE A:112 , TRP A:120 , LEU A:294 , ALA A:297 , GLY A:298 , THR A:301 , THR A:305 , SER A:365 , HIS A:368 , PRO A:427 , PHE A:428 , SER A:429 , ARG A:433 , CYS A:435 , VAL A:436 , XI1 A:1493 , HOH A:2002 , HOH A:2007BINDING SITE FOR RESIDUE HEM A1494

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5A5I)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Gln A:278 -Pro A:279

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5A5I)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5A5I)

(-) Exons   (0, 0)

(no "Exon" information available for 5A5I)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:453
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...............hhhhhhhhhhhhhhhhh.eeeeee..eeeeee.hhhhhhhhhh.......ee................hhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhh.......ee....eee..eee....eeee.hhhhhh...........hhhhh.................hhhhh..hhhhhhhhhhhhhhhhhhheeeee........................eeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5a5i A  26 RGKLPPGPTPLPLQIGIKDISKSLTNLSKVYGPVFTLYFGLKPIVVLHGYEAVKEALIDLGEEFSGRGILAERANRGFGIVFSNGKKWKEIRRFSLMTLRNFGMGKRSIEDRVQEEARCLVEELRKTKASPCDPTFILGCAPCNVICSIIFHKRFDYKDQQFLNLMEKLNENIKILSSPWIPIIDYFPGTHNKLLKNVAFMKSYILEKVKEHQESMDMNNPQDFIDCFLMKMEKEKHNQPSEFTIESLENTAVDLFGAGTETTSTTLRYALLLLLKHPEVTAKVQEEIERVIGRNRSPCMQDRSHMPYTDAVVHEVQRYIDLLPTSLPHAVTCDIKFRNYLIPKGTTILISLTSVLHDNKEFPNPEMFDPHHFLDEGGNFKKSKYFMPFSAGKRICVGEALAGMELFLFLTSILQNFNLKSLVDPKNLDTTPVVNGFASVPPFYQLCFIPIHH 492
                                    35 ||     50        60        70        80        90       102       112       122       132       142       152       162       172       182       192       202       212||     229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489   
                                      37|                                                      99|                                                                                                            213|                                                                                                                                                                                                                                                                               
                                       43                                                      102                                                                                                             221
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5A5I)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5A5I)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5A5I)

(-) Gene Ontology  (34, 34)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CP2C9_HUMAN | P11712: 1og2 1og5 1r9o 4nz2 5a5j 5k7k

(-) Related Entries Specified in the PDB File

5a5j CYTOCHROME 2C9 P450 INHIBITOR COMPLEX