5K78 - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Biological Unit 5 (Jmol Viewer)

Title :   DBR1 IN COMPLEX WITH 16-MER BRANCHED RNA

Authors :   N. E. Clark, A. B. Taylor, P. J. Hart

Date :   25 May 16 (Deposition) - 07 Dec 16 (Release) - 14 Dec 16 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.64

Chains :   Asym. Unit : A,B,C,D,E,X,Y,x,y
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C,X,x  (1x)
Biol. Unit 4: D,Y,y  (1x)
Biol. Unit 5: E  (1x)

Keywords :   Metalloenzyme, Complex, Branched Rna, Hydrolase-Rna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   N. E. Clark, A. Katolik, K. Roberts, A. B. Taylor, S. P. Holloway, J. P. Schuermann, E. J. Montemayor, S. W. Stevens, P. F. Fitzpatrick, M. J. Damha, P. J. Hart
The Rna Lariat Debranching Enzyme Dbr1: Metal Dependence An Branched Rna Co-Crystal Structures
Proc. Natl. Acad. Sci. Usa 2016
PubMed: search | Reference-DOI: 10.1073/PNAS.1612729114

Molecule 1 - RNA LARIAT DEBRANCHING ENZYME, PUTATIVE
	Chains	:	A, B, C, D, E
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Gene	:	EHI_062730
	Organism Scientific	:	ENTAMOEBA HISTOLYTICA
	Organism Taxid	:	5759

Molecule 2 - BRANCH 1 OF BRANCHED RNA 5'-UACUAA(2'-GUAUGU)CAAGU-3'
	Chains	:	X, Y
	Engineered	:	YES
	Organism Scientific	:	SACCHAROMYCES CEREVISIAE
	Organism Taxid	:	4932
	Other Details	:	THIS IS A BRANCHED RNA 5'-UACUAA(2'-GUAUG)CAAGU-3'
	Synthetic	:	YES

Molecule 3 - BRANCH 2 OF BRANCHED RNA 5'-UACUAA(2'-GUAUGU)CAAGU-3'
	Chains	:	x, y
	Engineered	:	YES
	Organism Scientific	:	SACCHAROMYCES CEREVISIAE
	Organism Taxid	:	4932
	Other Details	:	THIS IS A BRANCHED RNA 5'-UACUAA(2'-GUAUG)CAAGU-3'
	Synthetic	:	YES

		1	2	3	4	5	6	7	8	9
Asymmetric Unit	:	A	B	C	D	E	X	Y	x	y
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C			X		x
Biological Unit 4 (1x)	:				D			Y		y
Biological Unit 5 (1x)	:					E

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 23)

No.	Name	Count	Type	Full Name
1	FE2	5	Ligand/Ion	FE (II) ION
2	SO4	13	Ligand/Ion	SULFATE ION
3	ZN	5	Ligand/Ion	ZINC ION

Biological Unit 1 (2, 3)

No.	Name	Count	Type	Full Name
1	FE2	1	Ligand/Ion	FE (II) ION
2	SO4	2	Ligand/Ion	SULFATE ION
3	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 2 (2, 4)

No.	Name	Count	Type	Full Name
1	FE2	1	Ligand/Ion	FE (II) ION
2	SO4	3	Ligand/Ion	SULFATE ION
3	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 3 (2, 5)

No.	Name	Count	Type	Full Name
1	FE2	1	Ligand/Ion	FE (II) ION
2	SO4	4	Ligand/Ion	SULFATE ION
3	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 4 (2, 4)

No.	Name	Count	Type	Full Name
1	FE2	1	Ligand/Ion	FE (II) ION
2	SO4	3	Ligand/Ion	SULFATE ION
3	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 5 (2, 2)

No.	Name	Count	Type	Full Name
1	FE2	1	Ligand/Ion	FE (II) ION
2	SO4	1	Ligand/Ion	SULFATE ION
3	ZN	-1	Ligand/Ion	ZINC ION

Asymmetric Unit (25, 25)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ASP A:45 , ASN A:90 , HIS A:180 , HIS A:230 , ZN A:402	binding site for residue FE2 A 401
02	AC2	SOFTWARE	CYS A:14 , HIS A:16 , ASP A:45 , HIS A:232 , FE2 A:401	binding site for residue ZN A 402
03	AC3	SOFTWARE	ARG A:50 , ASN A:95 , HIS A:99 , PRO A:146	binding site for residue SO4 A 403
04	AC4	SOFTWARE	LYS A:59 , ILE A:132 , LYS A:134 , PHE A:155	binding site for residue SO4 A 404
05	AC5	SOFTWARE	ASP B:45 , ASN B:90 , HIS B:180 , HIS B:230 , ZN B:402	binding site for residue FE2 B 401
06	AC6	SOFTWARE	CYS B:14 , HIS B:16 , ASP B:45 , HIS B:232 , FE2 B:401	binding site for residue ZN B 402
07	AC7	SOFTWARE	ARG B:50 , ASN B:95 , HIS B:99	binding site for residue SO4 B 403
08	AC8	SOFTWARE	THR B:307 , LYS B:308 , LYS C:215	binding site for residue SO4 B 404
09	AC9	SOFTWARE	LYS B:305 , HIS B:355	binding site for residue SO4 B 405
10	AD1	SOFTWARE	ASP C:45 , ASN C:90 , HIS C:180 , HIS C:230 , ZN C:402 , G x:510	binding site for residue FE2 C 401
11	AD2	SOFTWARE	CYS C:14 , HIS C:16 , ASP C:45 , HIS C:232 , FE2 C:401 , G x:510	binding site for residue ZN C 402
12	AD3	SOFTWARE	ARG C:50 , ASN C:95 , HIS C:99	binding site for residue SO4 C 403
13	AD4	SOFTWARE	SER C:172 , GLN C:173	binding site for residue SO4 C 404
14	AD5	SOFTWARE	LYS C:18 , TYR C:64 , LYS C:249 , A X:501	binding site for residue SO4 C 405
15	AD6	SOFTWARE	LYS C:320 , TYR C:321 , TYR D:51 , TYR D:74 , THR D:332	binding site for residue SO4 C 406
16	AD7	SOFTWARE	ASP D:45 , ASN D:90 , HIS D:180 , HIS D:230 , ZN D:402 , G y:510	binding site for residue FE2 D 401
17	AD8	SOFTWARE	CYS D:14 , HIS D:16 , ASP D:45 , HIS D:232 , FE2 D:401 , G y:510	binding site for residue ZN D 402
18	AD9	SOFTWARE	ARG D:50 , TYR D:57 , ASN D:95 , HIS D:99 , PRO D:146	binding site for residue SO4 D 403
19	AE1	SOFTWARE	SER D:172 , GLN D:173	binding site for residue SO4 D 404
20	AE2	SOFTWARE	ARG D:20 , GLU D:21 , ARG D:24	binding site for residue SO4 D 405
21	AE3	SOFTWARE	ASP E:45 , ASN E:90 , HIS E:180 , HIS E:230 , ZN E:402	binding site for residue FE2 E 401
22	AE4	SOFTWARE	CYS E:14 , HIS E:16 , ASP E:45 , HIS E:232 , FE2 E:401	binding site for residue ZN E 402
23	AE5	SOFTWARE	ARG E:50 , ASN E:95 , HIS E:99 , PRO E:146	binding site for residue SO4 E 403
24	AE6	SOFTWARE	HIS C:16 , LYS C:18 , ASP C:45 , GLN C:47 , TYR C:64 , ASN C:90 , GLY C:201 , PHE C:202 , ASP C:205 , LEU C:209 , HIS C:230 , MET C:231 , HIS C:232 , LYS C:249 , FE2 C:401 , ZN C:402 , SO4 C:405 , A X:500 , C X:502 , U x:511	binding site for Di-nucleotide G x 510 and A X 501
25	AE7	SOFTWARE	HIS D:16 , ASP D:45 , GLN D:47 , VAL D:60 , PRO D:61 , LYS D:63 , TYR D:64 , ASN D:90 , GLY D:201 , PHE D:202 , ASP D:205 , LEU D:209 , HIS D:230 , MET D:231 , HIS D:232 , LYS D:249 , FE2 D:401 , ZN D:402 , A Y:500 , C Y:502 , U y:511	binding site for Di-nucleotide G y 510 and A Y 501

(no "SS Bond" information available for 5K78)

Asymmetric Unit

No.	Residues
1	Tyr A:144	-	Pro A:145
2	Phe A:292	-	Pro A:293
3	Tyr B:144	-	Pro B:145
4	Phe B:292	-	Pro B:293
5	Tyr C:144	-	Pro C:145
6	Phe C:292	-	Pro C:293
7	Tyr D:144	-	Pro D:145
8	Phe D:292	-	Pro D:293
9	Tyr E:144	-	Pro E:145
10	Phe E:292	-	Pro E:293

(no "SAP(SNP)/Variant" information available for 5K78)

(no "PROSITE Motif" information available for 5K78)

(no "Exon" information available for 5K78)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:347
                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.....hhhhhhhhhhhhhhhhh..eeeeee........hhhhhhhh..hhhhh...hhhhhhh........eee......hhhhhhhh...eeee..eee...eeeeee..eeeeee....hhhhh...ee...hhhhh........hhhhhhhhhhh.....eeee.....hhhhhhhhhhhhhhh.hhhhhhhhh.hhhhhhhhhhhh..eeee......eeeee..eeeee.........eeeeeee.......eehhhhhhhhhhhhhhhh...ee.....hhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5k78 A   5 QIQHIAIVGCVHGKYREMYRQLSEYEKSTGKEISFVICTGDMQTLRYEADLVYLKVPPKYKQMGDFHLYYEGKEKAPYLTLFIGGNAESSNVLLHLYNGGFVCFNMYYLGVCSCININGLRIVGVSGIYKSFDEKKPYTYPPSPNDVVSLFHTRNYVIQMLSNLSQSSQIDISLSHDWPQGIVMKGNYKQLYRFQPGFKKDGASLGSPINKVILNTLKPKYWISGHMHCEYHAEEGPTHFIALGKIGYKNAISYLDLPLKQKTDLEYDKDWVCNLIMTWPAFSNKAQFPDLSYSISELLSKRTKELDKKIIELWEKYIGLKIIYDSDTFDIQFTSRRFYIEKIYNEL 351
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344

Chain B from PDB  Type:PROTEIN  Length:351
                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.....hhhhhhhhhhhhhhhh...eeeeee........hhhhhhhh..hhhhh...hhhhhhh........eee......hhhhhhhh...eeee..eee...eeeeee..eeeeee....hhhhh...ee...hhhhh........hhhhhhhhhhh.....eeee.....hhhhhhhhhhhhhhh.hhhhhhhhh.hhhhhhhhhhhh..eeee......eeeee..eeeee.........eeeeeee.......eehhhhhhhhhhhhhhhh...ee.....hhhhhhhh.hhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5k78 B   5 QIQHIAIVGCVHGKYREMYRQLSEYEKSTGKEISFVICTGDMQTLRYEADLVYLKVPPKYKQMGDFHLYYEGKEKAPYLTLFIGGNAESSNVLLHLYNGGFVCFNMYYLGVCSCININGLRIVGVSGIYKSFDEKKPYTYPPSPNDVVSLFHTRNYVIQMLSNLSQSSQIDISLSHDWPQGIVMKGNYKQLYRFQPGFKKDGASLGSPINKVILNTLKPKYWISGHMHCEYHAEEGPTHFIALGKIGYKNAISYLDLPLKQKTDLEYDKDWVCNLIMTWPAFSNKAQFPDLSYSISELLSKRTKELDKKIIELWEKYIGLKIIYDSDTFDIQFTSRRFYIEKIYNELNINH 355
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354

Chain C from PDB  Type:PROTEIN  Length:349
                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.....hhhhhhhhhhhhhhhhh..eeeeee........hhhhhhhh..hhhhh...hhhhhhh........eee......hhhhhhhh...eeee..eee...eeeeee..eeeeee....hhhhh...ee...hhhhhhh......hhhhhhhhhhh.....eeee.....hhhhhhhhhhhhhhh.hhhhhhhhh.hhhhhhhhhhhh..eeee......eeeee..eeeee.....hhh.eeeeeee.......eehhhhhhhhhhhhhhhh...ee.....hhhhhhh..hhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5k78 C   5 QIQHIAIVGCVHGKYREMYRQLSEYEKSTGKEISFVICTGDMQTLRYEADLVYLKVPPKYKQMGDFHLYYEGKEKAPYLTLFIGGNAESSNVLLHLYNGGFVCFNMYYLGVCSCININGLRIVGVSGIYKSFDEKKPYTYPPSPNDVVSLFHTRNYVIQMLSNLSQSSQIDISLSHDWPQGIVMKGNYKQLYRFQPGFKKDGASLGSPINKVILNTLKPKYWISGHMHCEYHAEEGPTHFIALGKIGYKNAISYLDLPLKQKTDLEYDKDWVCNLIMTWPAFSNKAQFPDLSYSISELLSKRTKELDKKIIELWEKYIGLKIIYDSDTFDIQFTSRRFYIEKIYNELNI 353
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344

Chain D from PDB  Type:PROTEIN  Length:349
                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.....hhhhhhhhhhhhhhhhh..eeeeee........hhhhhhhh..hhhhh...hhhhhhh........eee......hhhhhhhh...eeee..eee...eeeeee..eeeeee....hhhhh...ee...hhhhh........hhhhhhhhhhh.....eee......hhhhhhhhhhhhhhh.hhhhhhhhh.hhhhhhhhhhhh..eeee......eeeee..eeeee.....hhh.eeeeeee.......eehhhhhhhhhhhhhhhh...ee.....hhhhhhhh.hhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5k78 D   5 QIQHIAIVGCVHGKYREMYRQLSEYEKSTGKEISFVICTGDMQTLRYEADLVYLKVPPKYKQMGDFHLYYEGKEKAPYLTLFIGGNAESSNVLLHLYNGGFVCFNMYYLGVCSCININGLRIVGVSGIYKSFDEKKPYTYPPSPNDVVSLFHTRNYVIQMLSNLSQSSQIDISLSHDWPQGIVMKGNYKQLYRFQPGFKKDGASLGSPINKVILNTLKPKYWISGHMHCEYHAEEGPTHFIALGKIGYKNAISYLDLPLKQKTDLEYDKDWVCNLIMTWPAFSNKAQFPDLSYSISELLSKRTKELDKKIIELWEKYIGLKIIYDSDTFDIQFTSRRFYIEKIYNELNI 353
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344

Chain E from PDB  Type:PROTEIN  Length:349
                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.....hhhhhhhhhhhhhhhhh..eeeeee........hhhhhhhh..hhhhh...hhhhhhh........eee......hhhhhhhh...eeee..eee...eeeeee..eeeeee....hhhhh...ee...hhhhhhh......hhhhhhhhhhh.....eeee.....hhhhhhhhhhhhhhh.hhhhhhhhh.hhhhhhhhhhhh..eeee......eeeee..eeeee.........eeeeeee.......eehhhhhhhhhhhhhhhh...ee.....hhhhhhhh.hhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5k78 E   5 QIQHIAIVGCVHGKYREMYRQLSEYEKSTGKEISFVICTGDMQTLRYEADLVYLKVPPKYKQMGDFHLYYEGKEKAPYLTLFIGGNAESSNVLLHLYNGGFVCFNMYYLGVCSCININGLRIVGVSGIYKSFDEKKPYTYPPSPNDVVSLFHTRNYVIQMLSNLSQSSQIDISLSHDWPQGIVMKGNYKQLYRFQPGFKKDGASLGSPINKVILNTLKPKYWISGHMHCEYHAEEGPTHFIALGKIGYKNAISYLDLPLKQKTDLEYDKDWVCNLIMTWPAFSNKAQFPDLSYSISELLSKRTKELDKKIIELWEKYIGLKIIYDSDTFDIQFTSRRFYIEKIYNELNI 353
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344

Chain X from PDB  Type:DNA/RNA  Length:5
                                     
                 5k78 X 500 AACAA 504

Chain Y from PDB  Type:DNA/RNA  Length:4
                                    
                 5k78 Y 500 AACA 503

Chain x from PDB  Type:DNA/RNA  Length:6
                                      
                 5k78 x 510 GUAUGU 515

Chain y from PDB  Type:DNA/RNA  Length:5
                                     
                 5k78 y 510 GUAUG 514

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 5K78)

(no "CATH Domain" information available for 5K78)

(no "Pfam Domain" information available for 5K78)

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	Cis Peptide Bonds
		Phe A:292 - Pro A:293	[ RasMol ]
		Phe B:292 - Pro B:293	[ RasMol ]
		Phe C:292 - Pro C:293	[ RasMol ]
		Phe D:292 - Pro D:293	[ RasMol ]
		Phe E:292 - Pro E:293	[ RasMol ]
		Tyr A:144 - Pro A:145	[ RasMol ]
		Tyr B:144 - Pro B:145	[ RasMol ]
		Tyr C:144 - Pro C:145	[ RasMol ]
		Tyr D:144 - Pro D:145	[ RasMol ]
		Tyr E:144 - Pro E:145	[ RasMol ]

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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 23)

Sites (25, 25)

SS Bonds (0, 0)

Cis Peptide Bonds (10, 10)

Sequence-Structure Mapping

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