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(-) Description

Title :  CRYSTAL STRUCTURE OF GLUCOSYL-3-PHOSPHOGLYCERATE SYNTHASE FROM MYCOBACTERIUM TUBERCULOSIS IN COMPLEX WITH MN2+, URIDINE-DIPHOSPHATE (UDP) AND GLUCOSYL-3-PHOSPHOGLYCERATE (GPG) - GPGS*GPG*UDP*MN2+
 
Authors :  D. Albesa-Jove, E. Sancho-Vaello, A. Rodrigo-Unzueta, N. Comino, A. C Gonzalez, P. Arrasate, S. Urresti, M. E. Guerin
Date :  09 May 16  (Deposition) - 24 May 17  (Release) - 24 May 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. Albesa-Jove, J. Romero-Garcia, E. Sancho-Vaello, F. -X. Contreras, A. Rodrigo-Unzueta, N. Comino, A. Carreras-Gonzalez, P. Arrasate, S. Urresti, X. Biarnes, A. Planas M. E. Guerin
Structural Snapshots Of A Retaining Glycosyltransferase Along The Catalytic Cycle: Dynamics Of Open To Close Active Site Conformations
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - GLUCOSYL-3-PHOSPHOGLYCERATE SYNTHASE
    Chains: A
    EC Number: 2.4.1.266
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: GPGS, RV1208
    Organism Scientific: MYCOBACTERIUM TUBERCULOSIS
    Organism Taxid: 83332
    Strain: ATCC 25618 / H37RV

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 5)

Asymmetric Unit (4, 5)
No.NameCountTypeFull Name
1EDO2Ligand/Ion1,2-ETHANEDIOL
2MN1Ligand/IonMANGANESE (II) ION
3UDP1Ligand/IonURIDINE-5'-DIPHOSPHATE
4XDX1Ligand/Ion(2R)-2-(ALPHA-D-GLUCOPYRANOSYLOXY)-3-(PHOSPHONOOXY)PROPANOIC ACID
Biological Unit 1 (3, 8)
No.NameCountTypeFull Name
1EDO4Ligand/Ion1,2-ETHANEDIOL
2MN-1Ligand/IonMANGANESE (II) ION
3UDP2Ligand/IonURIDINE-5'-DIPHOSPHATE
4XDX2Ligand/Ion(2R)-2-(ALPHA-D-GLUCOPYRANOSYLOXY)-3-(PHOSPHONOOXY)PROPANOIC ACID

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:136 , HIS A:258 , UDP A:402 , HOH A:504binding site for residue MN A 401
2AC2SOFTWAREPRO A:50 , ALA A:51 , LEU A:52 , GLU A:54 , SER A:81 , GLY A:113 , LYS A:114 , ASP A:134 , SER A:135 , ASP A:136 , TYR A:229 , HIS A:258 , ARG A:259 , ARG A:261 , MET A:269 , MN A:401 , XDX A:405 , HOH A:514binding site for residue UDP A 402
3AC3SOFTWAREALA A:226 , PRO A:227 , THR A:276 , SER A:279 , ARG A:280 , SER A:311 , LEU A:312 , ASP A:314binding site for residue EDO A 403
4AC4SOFTWAREARG A:101 , PRO A:112binding site for residue EDO A 404
5AC5SOFTWARELYS A:114 , ASP A:134 , TYR A:165 , GLY A:184 , ARG A:185 , VAL A:186 , THR A:187 , LEU A:209 , SER A:210 , GLY A:211 , TYR A:229 , GLU A:232 , ARG A:256 , HIS A:258 , ASN A:260 , UDP A:402 , HOH A:513 , HOH A:514binding site for residue XDX A 405

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5JT0)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5JT0)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 5JT0)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:279
                                                                                                                                                                                                                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee......hhhhhhhhh....eeeeeee.....hhhhhhhhhhhhh.....eeeeee.....hhhhhhhhh..eeeehhhhh.......hhhhhhhhhhhh....eeee..........hhhhhhhhhhhhh....eeeee...hhhhhhhhhhhhhhhhhhhh.........eeeehhhhh.....hhhhhhhhhhhhhhhhhh...eeeee.........hhhhhhhhhhhhhhhhhhhh.........eee....eee.........hhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5jt0 A  21 PLDTTWHRPGWTIGELEAAKAGRTISVVLPALNEEATIESVIDSISPLVDGLVDELIVLDSGSTDDTEIRAIASGARVVSREQALPEVPVRPGKGEALWRSLAATSGDIVVFIDSDLINPHPLFVPWLVGPLLTGEGIQLVKSFYRGGRVTELVARPLLAALRPELGCVLQPLSGEYAASRELLTSLPFAPGYGVEIGLLIDTFDRLGLDAIAQVNLGVRAHRNRPLDELGAMSRQVIATLLSRCGIPDSGVGLTQFLDYTRHTWPVSLVDRPPMKVMR 322
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160     ||186       196       206       216       226       236       246       256       266       276       286       303       313         
                                                                                                                                                                           166|                                                                                                            294|                    
                                                                                                                                                                            183                                                                                                             302
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5JT0)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5JT0)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5JT0)

(-) Gene Ontology  (8, 8)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        GPGS_MYCTU | P9WMW9: 3e25 3e26 4ddz 4de7 4dec 4y6n 4y6u 4y7f 4y7g 4y9x 5jqq 5jqx 5juc

(-) Related Entries Specified in the PDB File

5jsx