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(-) Description

Title :  CRYSTAL STRUCTURE OF GLUCOSYL-3-PHOSPHOGLYCERATE SYNTHASE FROM MYCOBACTERIUM TUBERCULOSIS IN COMPLEX WITH PHOSPHOGLYCERIC ACID (PGA) - GPGS*PGA
 
Authors :  D. Albesa-Jove, E. Sancho-Vaello, A. Rodrigo-Unzueta, N. Comino, A. C Gonzalez, P. Arrasate, S. Urresti, M. E. Guerin
Date :  05 May 16  (Deposition) - 24 May 17  (Release) - 24 May 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.82
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C  (2x)
Biol. Unit 3:  D  (2x)
Keywords :  Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. Albesa-Jove, J. Romero-Garcia, E. Sancho-Vaello, F. -X. Contreras, A. Rodrigo-Unzueta, N. Comino, A. Carreras-Gonzalez, P. Arrasate, S. Urresti, X. Biarnes, A. Planas M. E. Guerin
Structural Snapshots Of A Retaining Glycosyltransferase Along The Catalytic Cycle: Cynamics Of Open To Close Active Site Conformations
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - GLUCOSYL-3-PHOSPHOGLYCERATE SYNTHASE
    Chains: A, B, C, D
    EC Number: 2.4.1.266
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: GPGS, RV1208
    Organism Scientific: MYCOBACTERIUM TUBERCULOSIS H37RV
    Organism Taxid: 419947

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (2x):   C 
Biological Unit 3 (2x):    D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric Unit (1, 4)
No.NameCountTypeFull Name
13PG4Ligand/Ion3-PHOSPHOGLYCERIC ACID
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
13PG2Ligand/Ion3-PHOSPHOGLYCERIC ACID
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
13PG2Ligand/Ion3-PHOSPHOGLYCERIC ACID
Biological Unit 3 (1, 2)
No.NameCountTypeFull Name
13PG2Ligand/Ion3-PHOSPHOGLYCERIC ACID

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:182 , GLY A:183 , GLY A:184 , ARG A:185 , VAL A:186 , THR A:187 , HIS A:258 , MET A:269 , HOH A:505 , HOH A:507 , HOH A:514binding site for residue 3PG A 401
2AC2SOFTWAREGLY B:183 , GLY B:184 , ARG B:185 , VAL B:186 , THR B:187 , HIS B:258 , ASN B:260 , MET B:269binding site for residue 3PG B 401
3AC3SOFTWAREGLY C:183 , GLY C:184 , ARG C:185 , VAL C:186 , THR C:187 , HIS C:258 , ASN C:260 , MET C:269 , HOH C:516binding site for residue 3PG C 401
4AC4SOFTWAREGLY D:182 , GLY D:183 , GLY D:184 , ARG D:185 , VAL D:186 , THR D:187 , HIS D:258 , MET D:269binding site for residue 3PG D 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5JQX)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5JQX)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5JQX)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5JQX)

(-) Exons   (0, 0)

(no "Exon" information available for 5JQX)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:280
                                                                                                                                                                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee......hhhhhhhh.....eeeeeee.....hhhhhhhhhhhhh.....eeeeee.....hhhhhhhh...eeeehhhhh.......hhhhhhhhhh......eeee..........hhhhhhhhhhhh.....eeeee....hhhhhhhhhhhhhhhhhhhh.........eeeehhhhh.....hhhhhhhhhhhhhhhhhh...eeeee.........hhhhhhhhhhhhhhhhhhh..........eee...eee.........hhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5jqx A  20 LPLDTTWHRPGWTIGELEAAKAGRTISVVLPALNEEATIESVIDSISPLVDGLVDELIVLDSGSTDDTEIRAIASGARVVSREQALPEVPVRPGKGEALWRSLAATSGDIVVFIDSDLINPHPLFVPWLVGPLLTGEGIQLVKSFYRGGGRVTELVARPLLAALRPELGCVLQPLSGEYAASRELLTSLPFAPGYGVEIGLLIDTFDRLGLDAIAQVNLGVRAHRNRPLDELGAMSRQVIATLLSRCGIPDSGVGLTQFLYTRHTWPVSLVDRPPMKVMR 322
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159      |184       194       204       214       224       234       244       254       264       274       284       294|      312       322
                                                                                                                                                                            166|                                                                                                             294|                   
                                                                                                                                                                             182                                                                                                              303                   


Chain B from PDB  Type:PROTEIN  Length:280
                                                                                                                                                                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eee......hhhhhhhh.....eeeeeee.....hhhhhhhhhhhhh.....eeeeee.....hhhhhhhh...eeeehhhhh.......hhhhhhhhhh......eeee..........hhhhhhhhhhhh.....eeeee....hhhhhhhhhhhhhhhhhhhh.........eeeehhhhh.....hhhhhhhhhhhhhhhhhh...eeeee.........hhhhhhhhhhhhhhhhhhh..........ee....ee.........hhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5jqx B  19 ALPLDTTWHRPGWTIGELEAAKAGRTISVVLPALNEEATIESVIDSISPLVDGLVDELIVLDSGSTDDTEIRAIASGARVVSREQALPEVPVRPGKGEALWRSLAATSGDIVVFIDSDLINPHPLFVPWLVGPLLTGEGIQLVKSFYRGGGRVTELVARPLLAALRPELGCVLQPLSGEYAASRELLTSLPFAPGYGVEIGLLIDTFDRLGLDAIAQVNLGVRAHRNRPLDELGAMSRQVIATLLSRCGIPDSGVGLTQFYTRHTWPVSLVDRPPMKVMR 322
                                    28        38        48        58        68        78        88        98       108       118       128       138       148       158       183       193       203       213       223       233       243       253       263       273       283       293|      312       322
                                                                                                                                                                             166|                                                                                                            293|                   
                                                                                                                                                                              182                                                                                                             303                   


Chain C from PDB  Type:PROTEIN  Length:280
                                                                                                                                                                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee......hhhhhhhh.....eeeeeee.....hhhhhhhhhhhhh.....eeeeee.....hhhhhhhh...eeeehhhhh.......hhhhhhhhhh......eeee..........hhhhhhhhhhhh.....eeeee....hhhhhhhhhhhhhhhhhhhh.........eeeehhhhh.....hhhhhhhhhhhhhhhhhh...eeeee.........hhhhhhhhhhhhhhhhhhh..........eee...eee.........hhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5jqx C  20 LPLDTTWHRPGWTIGELEAAKAGRTISVVLPALNEEATIESVIDSISPLVDGLVDELIVLDSGSTDDTEIRAIASGARVVSREQALPEVPVRPGKGEALWRSLAATSGDIVVFIDSDLINPHPLFVPWLVGPLLTGEGIQLVKSFYRGGGRVTELVARPLLAALRPELGCVLQPLSGEYAASRELLTSLPFAPGYGVEIGLLIDTFDRLGLDAIAQVNLGVRAHRNRPLDELGAMSRQVIATLLSRCGIPDSGVGLTQFLYTRHTWPVSLVDRPPMKVMR 322
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159      |184       194       204       214       224       234       244       254       264       274       284       294|      312       322
                                                                                                                                                                            166|                                                                                                             294|                   
                                                                                                                                                                             182                                                                                                              303                   


Chain D from PDB  Type:PROTEIN  Length:280
                                                                                                                                                                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee......hhhhhhhh.....eeeeeee.....hhhhhhhhhhhhh.....eeeeee.....hhhhhhhh...eeeehhhhh.......hhhhhhhhhh......eeee..........hhhhhhhhhhhh.....eeeee....hhhhhhhhhhhhhhhhhhhh.........eeeehhhhh.....hhhhhhhhhhhhhhhhhh...eeeee.........hhhhhhhhhhhhhhhhhhh..........eee...eee.........hhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5jqx D  20 LPLDTTWHRPGWTIGELEAAKAGRTISVVLPALNEEATIESVIDSISPLVDGLVDELIVLDSGSTDDTEIRAIASGARVVSREQALPEVPVRPGKGEALWRSLAATSGDIVVFIDSDLINPHPLFVPWLVGPLLTGEGIQLVKSFYRGGGRVTELVARPLLAALRPELGCVLQPLSGEYAASRELLTSLPFAPGYGVEIGLLIDTFDRLGLDAIAQVNLGVRAHRNRPLDELGAMSRQVIATLLSRCGIPDSGVGLTQFLYTRHTWPVSLVDRPPMKVMR 322
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159      |184       194       204       214       224       234       244       254       264       274       284       294|      312       322
                                                                                                                                                                            166|                                                                                                             294|                   
                                                                                                                                                                             182                                                                                                              303
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5JQX)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5JQX)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5JQX)

(-) Gene Ontology  (8, 8)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        GPGS_MYCTU | P9WMW9: 3e25 3e26 4ddz 4de7 4dec 4y6n 4y6u 4y7f 4y7g 4y9x 5jqq 5jt0 5juc

(-) Related Entries Specified in the PDB File

5jqq APO FORM