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(-) Description

Title :  CRYSTAL STRUCTURE OF 17BETA-HYDROXYSTEROID DEHYDROGENASE 14 T205 VARIANT IN COMPLEX WITH NAD.
 
Authors :  N. Bertoletti, S. Marchais-Oberwinkler, A. Heine, G. Klebe
Date :  07 May 16  (Deposition) - 13 Jul 16  (Release) - 10 Aug 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (4x)
Keywords :  Cofactor Complex, Hydroxysteroid Dehydrogenase, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. Bertoletti, F. Braun, M. Lepage, G. Moller, J. Adamski, A. Heine, G. Klebe, S. Marchais-Oberwinkler
New Insights Into Human 17 Beta-Hydroxysteroid Dehydrogenas Type 14: First Crystal Structures In Complex With A Steroidal Ligand And With A Potent Nonsteroidal Inhibitor.
J. Med. Chem. V. 59 6961 2016
PubMed-ID: 27362750  |  Reference-DOI: 10.1021/ACS.JMEDCHEM.6B00293

(-) Compounds

Molecule 1 - 17-BETA-HYDROXYSTEROID DEHYDROGENASE 14
    Chains: A
    EC Number: 1.1.1.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Taxid: 469008
    Expression System Variant: PLYSS
    Gene: HSD17B14, DHRS10, SDR3, SDR47C1, UNQ502/PRO474
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: 17-BETA-HSD 14,17-BETA-HYDROXYSTEROID DEHYDROGENASE DHRS10, DEHYDROGENASE/REDUCTASE SDR FAMILY MEMBER 10,RETINAL SHORT-CHAIN DEHYDROGENASE/REDUCTASE RETSDR3,SHORT CHAIN DEHYDROGENASE/REDUCTASE FAMILY 47C MEMBER 1

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (4x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 4)

Asymmetric Unit (4, 4)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION
2NAD1Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE
3PG41Ligand/IonTETRAETHYLENE GLYCOL
4PGE1Ligand/IonTRIETHYLENE GLYCOL
Biological Unit 1 (3, 12)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2NAD4Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE
3PG44Ligand/IonTETRAETHYLENE GLYCOL
4PGE4Ligand/IonTRIETHYLENE GLYCOL

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:16 , ARG A:19 , GLY A:20 , ILE A:21 , ASP A:40 , LYS A:41 , CYS A:61 , ASP A:62 , VAL A:63 , ASN A:89 , GLY A:91 , LEU A:113 , ILE A:139 , SER A:140 , SER A:141 , TYR A:154 , LYS A:158 , PRO A:184 , GLY A:185 , ILE A:187 , THR A:189 , LEU A:191 , TRP A:192 , HOH A:423 , HOH A:424 , HOH A:428binding site for residue NAD A 301
2AC2SOFTWAREALA A:149 , TYR A:253binding site for residue CL A 302
3AC3SOFTWAREARG A:82 , ARG A:203 , ILE A:206 , ASP A:267binding site for residue PGE A 304

(-) SS Bonds  (1, 1)

Asymmetric Unit
No.Residues
1A:255 -A:255

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5JS6)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5JS6)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5JS6)

(-) Exons   (0, 0)

(no "Exon" information available for 5JS6)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:268
                                                                                                                                                                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeee...hhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhhhh...eeee.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeee.hhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeee....hhhhhhhhh...hhhhhhhhhhhh.......hhhhhhhhhhhhhhh.......eeee.......................... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5js6 A   4 GTRYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQELPGAVFILCDVTQEDDVKTLVSETIRRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQGNVINISSLVGAIGQAQAVPYVATKGAVTAMTKALALDESPYGVRVNCISPGNIWTPLWEELAALMPDPRATIREGMLAQPLGRMGQPAEVGAAAVFLASEANFCTGIELLVTGGAELGYGCKASRSTPVDAPDIPSG 271
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5JS6)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5JS6)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5JS6)

(-) Gene Ontology  (11, 11)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        DHB14_HUMAN | Q9BPX1: 1yde 5en4 5hs6 5icm 5ics 5jsf 5l7t 5l7w 5l7y

(-) Related Entries Specified in the PDB File

5en4