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(-) Description

Title :  COMPLEX OF 17-BETA-HYDROXYSTEROID DEHYDROGENASE TYPE 14 WITH INHIBITOR.
 
Authors :  N. Bertoletti, F. Braun, S. Marchais-Oberwinkler, A. Heine, G. Klebe
Date :  09 Nov 15  (Deposition) - 23 Nov 16  (Release) - 21 Dec 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.52
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (4x)
Keywords :  Inhibitor Complex, Steroid Dehydrogenase, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. Braun, N. Bertoletti, G. Moller, J. Adamski, T. Steinmetzer, M. Salah, A. S. Abdelsamie, C. J. Van Koppen, A. Heine, G. Klebe, S. Marchais-Oberwinkler
First Structure-Activity Relationship Of 17 Beta-Hydroxysteroid Dehydrogenase Type 14 Nonsteroidal Inhibitors And Crystal Structures In Complex With The Enzyme.
J. Med. Chem. V. 59 10719 2016
PubMed-ID: 27933965  |  Reference-DOI: 10.1021/ACS.JMEDCHEM.6B01436

(-) Compounds

Molecule 1 - 17-BETA-HYDROXYSTEROID DEHYDROGENASE 14
    Chains: A
    EC Number: 1.1.1.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21
    Expression System Taxid: 511693
    Expression System Variant: PLYSS
    Gene: HSD17B14, DHRS10, SDR3, SDR47C1, UNQ502/PRO474
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: 17-BETA-HSD 14,17-BETA-HYDROXYSTEROID DEHYDROGENASE DHRS10, DEHYDROGENASE/REDUCTASE SDR FAMILY MEMBER 10,RETINAL SHORT-CHAIN DEHYDROGENASE/REDUCTASE RETSDR3,SHORT CHAIN DEHYDROGENASE/REDUCTASE FAMILY 47C MEMBER 1

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (4x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 3)

Asymmetric Unit (3, 3)
No.NameCountTypeFull Name
15Q61Ligand/Ion[2,3-BIS(OXIDANYL)PHENYL]-[6-(2-FLUORANYL-3-OXIDANYL-PHENYL)PYRIDIN-2-YL]METHANONE
2NA1Ligand/IonSODIUM ION
3NAD1Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE
Biological Unit 1 (2, 8)
No.NameCountTypeFull Name
15Q64Ligand/Ion[2,3-BIS(OXIDANYL)PHENYL]-[6-(2-FLUORANYL-3-OXIDANYL-PHENYL)PYRIDIN-2-YL]METHANONE
2NA-1Ligand/IonSODIUM ION
3NAD4Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:16 , ARG A:19 , GLY A:20 , ILE A:21 , ASP A:40 , LYS A:41 , CYS A:61 , ASP A:62 , VAL A:63 , ASN A:89 , GLY A:91 , LEU A:113 , ILE A:139 , SER A:140 , SER A:141 , TYR A:154 , LYS A:158 , PRO A:184 , GLY A:185 , ILE A:187 , THR A:189 , PRO A:190 , LEU A:191 , TRP A:192 , 5Q6 A:302 , HOH A:419 , HOH A:426 , HOH A:428 , HOH A:480binding site for residue NAD A 301
2AC2SOFTWAREHIS A:93 , SER A:141 , GLN A:148 , ALA A:149 , GLN A:150 , TYR A:154 , ASN A:186 , TRP A:192 , LEU A:195 , NAD A:301binding site for residue 5Q6 A 302
3AC3SOFTWAREGLU A:50 , LEU A:53 , PRO A:54 , ALA A:56 , HOH A:413binding site for residue NA A 303

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5EN4)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:251
                                                                                                                                                                                                                                                                                           
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeee...hhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhhhh...eeee.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeee..hhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeee....hhhhhhhhhh..hhhhhhhhhhhh.......hhhhhhhhhhhhhhh.......eeee......... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5en4 A   4 GTRYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQELPGAVFILCDVTQEDDVKTLVSETIRRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQGNVINISSLVGAIGQAQAVPYVATKGAVTAMTKALALDESPYGVRVNCISPGNIWTPLWEELAALMPDPRATIREGMLAQPLGRMGQPAEVGAAAVFLASEANFCTGIELLVTGGAELGYG 254
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5EN4)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5EN4)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (11, 11)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        DHB14_HUMAN | Q9BPX1: 1yde 5hs6 5icm 5ics 5js6 5jsf 5l7t 5l7w 5l7y

(-) Related Entries Specified in the PDB File

1yde