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(-) Description

Title :  NEPRILYSIN COMPLEXED WITH LBQ657
 
Authors :  N. Schiering, C. Wiesmann
Date :  29 Apr 16  (Deposition) - 15 Jun 16  (Release) - 29 Jun 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Hydrolase, Lbq657, Sacubitril, Heart Failure (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. Schiering, A. D'Arcy, F. Villard, P. Ramage, C. Logel, F. Cumin, G. M. Ksander, C. Wiesmann, R. G. Karki, M. Mogi
Structure Of Neprilysin In Complex With The Active Metabolite Of Sacubitril.
Sci Rep V. 6 27909 2016
PubMed-ID: 27302413  |  Reference-DOI: 10.1038/SREP27909

(-) Compounds

Molecule 1 - NEPRILYSIN
    Chains: A, B
    EC Number: 3.4.24.11
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Cell Line: SF21
    Expression System Taxid: 7108
    Expression System Vector Type: BACULOVIRUS
    Fragment: UNP RESIDUES 53-750
    Gene: MME, EPN
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Other Details: LBQ657 - THE ACTIVE METABOLITE OF SACUBITRIL, CONTAINED IN ENTRESTO (SACUBITRIL/VALSARTAN)
    Synonym: ATRIOPEPTIDASE,COMMON ACUTE LYMPHOCYTIC LEUKEMIA ANTIGEN, CALLA,ENKEPHALINASE,NEUTRAL ENDOPEPTIDASE 24.11,NEUTRAL ENDOPEPTIDASE,SKIN FIBROBLAST ELASTASE,SFE

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 14)

Asymmetric Unit (3, 14)
No.NameCountTypeFull Name
16LD2Ligand/IonSACUBITRILAT
2NAG10Ligand/IonN-ACETYL-D-GLUCOSAMINE
3ZN2Ligand/IonZINC ION
Biological Unit 1 (2, 6)
No.NameCountTypeFull Name
16LD1Ligand/IonSACUBITRILAT
2NAG5Ligand/IonN-ACETYL-D-GLUCOSAMINE
3ZN-1Ligand/IonZINC ION
Biological Unit 2 (2, 6)
No.NameCountTypeFull Name
16LD1Ligand/IonSACUBITRILAT
2NAG5Ligand/IonN-ACETYL-D-GLUCOSAMINE
3ZN-1Ligand/IonZINC ION

(-) Sites  (12, 12)

Asymmetric Unit (12, 12)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:583 , HIS A:587 , GLU A:646 , 6LD A:807binding site for residue ZN A 806
02AC2SOFTWAREARG A:102 , PHE A:106 , ARG A:110 , ASN A:542 , ALA A:543 , PHE A:544 , MET A:579 , HIS A:583 , GLU A:584 , HIS A:587 , GLU A:646 , ASP A:650 , PHE A:689 , VAL A:692 , TRP A:693 , HIS A:711 , ARG A:717 , ILE A:718 , ZN A:806 , HOH A:904 , HOH A:1184 , HOH A:1190binding site for residue 6LD A 807
03AC3SOFTWAREHIS B:583 , HIS B:587 , GLU B:646 , 6LD B:807binding site for residue ZN B 806
04AC4SOFTWAREARG B:102 , PHE B:106 , ARG B:110 , ASN B:542 , ALA B:543 , MET B:579 , HIS B:583 , GLU B:584 , HIS B:587 , GLU B:646 , ASP B:650 , PHE B:689 , VAL B:692 , TRP B:693 , HIS B:711 , ARG B:717 , ILE B:718 , ZN B:806 , HOH B:985 , HOH B:1007binding site for residue 6LD B 807
05AC5SOFTWAREASN A:144 , ALA A:147 , HOH A:959 , HOH A:969binding site for Mono-Saccharide NAG A 801 bound to ASN A 144
06AC6SOFTWAREASN A:284 , HOH A:995 , HOH A:1028binding site for Mono-Saccharide NAG A 805 bound to ASN A 284
07AC7SOFTWARELYS A:318 , ASN A:324 , ASN A:327 , GLU A:328 , HOH A:1033 , HOH A:1090 , HOH A:1137binding site for Mono-Saccharide NAG A 802 bound to ASN A 324
08AC8SOFTWAREASN A:490 , ASN A:494 , TYR A:623 , GLY A:626 , ASN A:627 , HOH A:902 , HOH A:906 , HOH A:958 , HOH A:1031 , HOH A:1104 , HOH A:1145binding site for Poly-Saccharide residues NAG A 803 through NAG A 804 bound to ASN A 627
09AC9SOFTWAREASN B:144 , ALA B:147 , ARG B:151 , HOH B:976binding site for Mono-Saccharide NAG B 801 bound to ASN B 144
10AD1SOFTWAREASN B:284 , LYS B:353 , HOH B:960 , HOH B:1045 , HOH B:1096 , HOH B:1122 , HOH B:1123binding site for Mono-Saccharide NAG B 805 bound to ASN B 284
11AD2SOFTWAREASN B:324 , ASN B:327 , GLU B:328binding site for Mono-Saccharide NAG B 802 bound to ASN B 324
12AD3SOFTWARETYR B:623 , GLY B:626 , ASN B:627binding site for Poly-Saccharide residues NAG B 803 through NAG B 804 bound to ASN B 627

(-) SS Bonds  (12, 12)

Asymmetric Unit
No.Residues
1A:56 -A:61
2A:79 -A:734
3A:87 -A:694
4A:142 -A:410
5A:233 -A:241
6A:620 -A:746
7B:56 -B:61
8B:79 -B:734
9B:87 -B:694
10B:142 -B:410
11B:233 -B:241
12B:620 -B:746

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Pro A:561 -Pro A:562
2Pro B:561 -Pro B:562

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5JMY)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5JMY)

(-) Exons   (0, 0)

(no "Exon" information available for 5JMY)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:696
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhh........hhhhhhhhhhhhhh.......eeehhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhh.hhhhhhh...hhhhhhhhhhhhhh.....eeeeeee..eeeeeeeeee.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhh.hhhhh.hhhhhh.eeehhhhhhhh..ee..ee.hhhhhhhhhhhhhh.......eeee.hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhheeeee..hhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhh....................eee....eeeee.hhh.........hhhhhhhhhhhhhhhhhhhhhh.hhhhh..........hhhhhhhhhhhhhhhhhhhhh..hhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhh..eeehhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh................ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5jmy A  54 GICKSSDCIKSAARLIQNMDATTEPCTDFFKYACGGWLKRNVIPETSSRYGNFDILRDELEVVLKDVLQEPKTEDIVAVQKAKALYRSCINESAIDSRGGEPLLKLLPDIYGWPVATENWEQKYGASWTAEKAIAQLNSKYGKKVLINLFVGTDDKNSVNHVIHIDQPRLGLPSRDYYECTGIYKEACTAYVDFMISVARLIRQEERLPIDENQLALEMNKVMELEKEIANATAKPEDRNDPMLLYNKMTLAQIQNNFSLEINGKPFSWLNFTNEIMSTVNISITNEEDVVVYAPEYLTKLKPILTKYSARDLQNLMSWRFIMDLVSSLSRTYKESRNAFRKALYGTTSETATWRRCANYVNGNMENAVGRLYVEAAFAGESKHVVEDLIAQIREVFIQTLDDLTWMDAETKKRAEEKALAIKERIGYPDDIVSNDNKLNNEYLELNYKEDEYFENIIQNLKFSQSKQLKKLREKVDKDEWISGAAVVNAFYSSGRNQIVFPAGILQPPFFSAQQSNSLNYGGIGMVIGHEITHGFDDNGRNFNKDGDLVDWWTQQSASNFKEQSQCMVYQYGNFSWDLAGGQHLNGINTLGENIADNGGLGQAYRAYQNYIKKNGEEKLLPGLDLNHKQLFFLNFAQVWCGTYRPEYAVNSIKTDVHSPGNFRIIGTLQNSAEFSEAFHCRKNSYMNPEKKCRVW 749
                                    63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543       553       563       573       583       593       603       613       623       633       643       653       663       673       683       693       703       713       723       733       743      


Chain B from PDB  Type:PROTEIN  Length:696
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhh........hhhhhhhhhhhhhh.......eeehhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh.hhhhh.hhhhhhh...hhhhhhhhhhhhhh.....eeeeeee..eeeeeeeeee.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhh.hhhhh.hhhhhh.eeehhhhhhhh..ee..ee.hhhhhhhhhhhhhh.......eeee.hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhheeeee..hhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhh..................eee....eeeee.hhh.........hhhhhhhhhhhhhhhhhhhhhh.hhhhh..........hhhhhhhhhhhhhhhhhhhhh..hhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhh..eeehhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh................ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5jmy B  54 GICKSSDCIKSAARLIQNMDATTEPCTDFFKYACGGWLKRNVIPETSSRYGNFDILRDELEVVLKDVLQEPKTEDIVAVQKAKALYRSCINESAIDSRGGEPLLKLLPDIYGWPVATENWEQKYGASWTAEKAIAQLNSKYGKKVLINLFVGTDDKNSVNHVIHIDQPRLGLPSRDYYECTGIYKEACTAYVDFMISVARLIRQEERLPIDENQLALEMNKVMELEKEIANATAKPEDRNDPMLLYNKMTLAQIQNNFSLEINGKPFSWLNFTNEIMSTVNISITNEEDVVVYAPEYLTKLKPILTKYSARDLQNLMSWRFIMDLVSSLSRTYKESRNAFRKALYGTTSETATWRRCANYVNGNMENAVGRLYVEAAFAGESKHVVEDLIAQIREVFIQTLDDLTWMDAETKKRAEEKALAIKERIGYPDDIVSNDNKLNNEYLELNYKEDEYFENIIQNLKFSQSKQLKKLREKVDKDEWISGAAVVNAFYSSGRNQIVFPAGILQPPFFSAQQSNSLNYGGIGMVIGHEITHGFDDNGRNFNKDGDLVDWWTQQSASNFKEQSQCMVYQYGNFSWDLAGGQHLNGINTLGENIADNGGLGQAYRAYQNYIKKNGEEKLLPGLDLNHKQLFFLNFAQVWCGTYRPEYAVNSIKTDVHSPGNFRIIGTLQNSAEFSEAFHCRKNSYMNPEKKCRVW 749
                                    63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543       553       563       573       583       593       603       613       623       633       643       653       663       673       683       693       703       713       723       733       743
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5JMY)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5JMY)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5JMY)

(-) Gene Ontology  (34, 34)

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  3.4.24.11
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 Related Entries

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UniProtKB/Swiss-Prot
        NEP_HUMAN | P08473: 1dl9 1dmt 1qvd 1r1h 1r1i 1r1j 1y8j 2qpj 2yb9 4cth

(-) Related Entries Specified in the PDB File

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