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(-) Description

Title :  NEPRILYSIN VARIANT G399V,G714K IN COMPLEX WITH PHOSPHORAMIDON
 
Authors :  C. I. Webster, M. Burrell, L. Olsson, S. B. Fowler, S. Digby, A. Sanderco A. Snijder, J. Tebbe, U. Haupts, J. Grudzinska, L. Jermutus, C. Anders
Date :  13 Mar 14  (Deposition) - 13 Aug 14  (Release) - 13 Aug 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.15
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Transferase, Amyloid Beta, Alzheimer'S Disease, Enzyme Engineering (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  C. I. Webster, M. Burrell, L. Olsson, S. B. Fowler, S. Digby, A. Sandercock, A. Snijder, J. Tebbe, U. Haupts, J. Grudzinska, L. Jermutus, C. Andersson
Engineering Neprilysin Activity And Specificity To Create A Novel Therapeutic For Alzheimer'S Disease.
Plos One V. 9 04001 2014
PubMed-ID: 25089527  |  Reference-DOI: 10.1371/JOURNAL.PONE.0104001

(-) Compounds

Molecule 1 - NEPRILYSIN
    ChainsA
    EC Number3.4.24.11
    EngineeredYES
    Expression SystemSACCHAROMYCES CEREVISIAE
    Expression System CommonBAKER'S YEAST
    Expression System Taxid4932
    FragmentEXTRACELLULAR DOMAIN, RESIDUES 52-750
    MutationYES
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymATRIOPEPTIDASE, COMMON ACUTE LYMPHOCYTIC LEUKEMIA ANTIGEN, CALLA, ENKEPHALINASE, NEUTRAL ENDOPEPTIDASE 24.11, NEP, NEUTRAL ENDOPEPTIDASE, SKIN FIBROBLAST ELASTASE, SFE, CD10

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit A
Biological Unit 1 (2x)A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 13)

Asymmetric Unit (4, 13)
No.NameCountTypeFull Name
1GOL8Ligand/IonGLYCEROL
2NAG3Ligand/IonN-ACETYL-D-GLUCOSAMINE
3RDF1Ligand/IonN-ALPHA-L-RHAMNOPYRANOSYLOXY(HYDROXYPHOSPHINYL)-L-LEUCYL-L-TRYPTOPHAN
4ZN1Ligand/IonZINC ION
Biological Unit 1 (3, 24)
No.NameCountTypeFull Name
1GOL16Ligand/IonGLYCEROL
2NAG6Ligand/IonN-ACETYL-D-GLUCOSAMINE
3RDF2Ligand/IonN-ALPHA-L-RHAMNOPYRANOSYLOXY(HYDROXYPHOSPHINYL)-L-LEUCYL-L-TRYPTOPHAN
4ZN-1Ligand/IonZINC ION

(-) Sites  (13, 13)

Asymmetric Unit (13, 13)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:583 , HIS A:587 , GLU A:646 , RDF A:1759BINDING SITE FOR RESIDUE ZN A1750
02AC2SOFTWAREPHE A:544 , TYR A:545 , GLU A:584 , RDF A:1759BINDING SITE FOR RESIDUE GOL A1751
03AC3SOFTWAREVAL A:622 , GLY A:626 , LEU A:638 , ASN A:639 , GLY A:640 , ILE A:641 , NAG A:754BINDING SITE FOR RESIDUE GOL A1752
04AC4SOFTWAREPRO A:482 , ASP A:484 , LYS A:491 , TRP A:534 , HOH A:2171 , HOH A:2220BINDING SITE FOR RESIDUE GOL A1753
05AC5SOFTWARECYS A:142 , ILE A:148 , SER A:380 , LYS A:387 , ARG A:409 , TYR A:506 , HOH A:2319BINDING SITE FOR RESIDUE GOL A1754
06AC6SOFTWAREGLU A:77 , CYS A:79 , HIS A:733 , ARG A:735 , SER A:738 , HOH A:2320BINDING SITE FOR RESIDUE GOL A1755
07AC7SOFTWARELEU A:254 , GLN A:257 , GLU A:258 , THR A:385BINDING SITE FOR RESIDUE GOL A1756
08AC8SOFTWAREPRO A:161 , ASP A:162 , TYR A:164 , GLN A:189 , HOH A:2070BINDING SITE FOR RESIDUE GOL A1757
09AC9SOFTWAREARG A:447 , LEU A:473 , ILE A:475 , GLU A:477BINDING SITE FOR RESIDUE GOL A1758
10BC1SOFTWAREPHE A:106 , VAL A:541 , ASN A:542 , ALA A:543 , ILE A:558 , PHE A:563 , HIS A:583 , GLU A:584 , HIS A:587 , GLU A:646 , TRP A:693 , VAL A:710 , HIS A:711 , ARG A:717 , ZN A:1750 , GOL A:1751 , HOH A:2228 , HOH A:2321BINDING SITE FOR RESIDUE RDF A1759
11BC2SOFTWAREASN A:144 , ALA A:147 , HOH A:2318BINDING SITE FOR MONO-SACCHARIDE NAG A 752 BOUND TO ASN A 144
12BC3SOFTWARETHR A:182 , LYS A:185 , ASN A:324 , GLU A:328BINDING SITE FOR MONO-SACCHARIDE NAG A 753 BOUND TO ASN A 324
13BC4SOFTWARETHR A:126 , TYR A:623 , GLY A:626 , ASN A:627 , GOL A:1752BINDING SITE FOR MONO-SACCHARIDE NAG A 754 BOUND TO ASN A 627

(-) SS Bonds  (6, 6)

Asymmetric Unit
No.Residues
1A:56 -A:61
2A:79 -A:734
3A:87 -A:694
4A:142 -A:410
5A:233 -A:241
6A:620 -A:746

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Pro A:561 -Pro A:562

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (6, 6)

Asymmetric Unit (6, 6)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_077685C143YNEP_HUMANDisease (SCA43)879255651AC142Y
2UniProtVAR_077686Y347CNEP_HUMANDisease (CMT2T)138218277AY346C
3UniProtVAR_077687A348PNEP_HUMANUnclassified (CMT2T)199567914AA347P
4UniProtVAR_077689A422DNEP_HUMANDisease (CMT2T)777476150AA421D
5UniProtVAR_077690Y497HNEP_HUMANPolymorphism200308207AY496H
6UniProtVAR_077691C621RNEP_HUMANDisease (CMT2T)879253752AC620R

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 1 (6, 12)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_077685C143YNEP_HUMANDisease (SCA43)879255651AC142Y
2UniProtVAR_077686Y347CNEP_HUMANDisease (CMT2T)138218277AY346C
3UniProtVAR_077687A348PNEP_HUMANUnclassified (CMT2T)199567914AA347P
4UniProtVAR_077689A422DNEP_HUMANDisease (CMT2T)777476150AA421D
5UniProtVAR_077690Y497HNEP_HUMANPolymorphism200308207AY496H
6UniProtVAR_077691C621RNEP_HUMANDisease (CMT2T)879253752AC620R

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (1, 1)

Asymmetric Unit (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ZINC_PROTEASEPS00142 Neutral zinc metallopeptidases, zinc-binding region signature.NEP_HUMAN581-590  1A:580-589
Biological Unit 1 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ZINC_PROTEASEPS00142 Neutral zinc metallopeptidases, zinc-binding region signature.NEP_HUMAN581-590  2A:580-589

(-) Exons   (22, 22)

Asymmetric Unit (22, 22)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.4dENST000003604904dENSE00001513376chr3:154798188-15479825568NEP_HUMAN-00--
1.9bENST000003604909bENSE00002152527chr3:154801947-154802116170NEP_HUMAN1-54541A:53-531
1.10aENST0000036049010aENSE00001019489chr3:154802848-15480288336NEP_HUMAN54-66131A:53-6513
1.13cENST0000036049013cENSE00002199839chr3:154832783-154832944162NEP_HUMAN66-120551A:65-11955
1.14ENST0000036049014ENSE00000934032chr3:154834268-15483434881NEP_HUMAN120-147281A:119-14628
1.15bENST0000036049015bENSE00000934033chr3:154834453-15483454896NEP_HUMAN147-179331A:146-17833
1.16ENST0000036049016ENSE00000934034chr3:154834657-154834775119NEP_HUMAN179-218401A:178-21740
1.17bENST0000036049017bENSE00000934035chr3:154836535-15483660066NEP_HUMAN219-240221A:218-23922
1.18ENST0000036049018ENSE00001019488chr3:154855891-154856025135NEP_HUMAN241-285451A:240-28445
1.19ENST0000036049019ENSE00000934036chr3:154857980-154858081102NEP_HUMAN286-319341A:285-31834
1.20ENST0000036049020ENSE00000934037chr3:154859780-154859916137NEP_HUMAN320-365461A:319-36446
1.21ENST0000036049021ENSE00000934038chr3:154860026-15486011994NEP_HUMAN365-396321A:364-39532
1.22ENST0000036049022ENSE00000934039chr3:154861232-154861360129NEP_HUMAN397-439431A:396-43843
1.23ENST0000036049023ENSE00000934040chr3:154862148-15486224699NEP_HUMAN440-472331A:439-47133
1.24ENST0000036049024ENSE00000934041chr3:154864933-15486501381NEP_HUMAN473-499271A:472-49827
1.25ENST0000036049025ENSE00000779819chr3:154866339-154866442104NEP_HUMAN500-534351A:499-53335
1.26ENST0000036049026ENSE00000779818chr3:154878179-15487823759NEP_HUMAN534-554211A:533-55321
1.27ENST0000036049027ENSE00000779817chr3:154884691-154884810120NEP_HUMAN554-594411A:553-59341
1.28ENST0000036049028ENSE00000779816chr3:154886281-154886414134NEP_HUMAN594-638451A:593-63745
1.29aENST0000036049029aENSE00000779815chr3:154886521-15488658666NEP_HUMAN639-660221A:638-65922
1.30bENST0000036049030bENSE00000779814chr3:154889906-15489000196NEP_HUMAN661-692321A:660-69132
1.31ENST0000036049031ENSE00000779812chr3:154890325-15489040177NEP_HUMAN693-718261A:692-71726
1.32aENST0000036049032aENSE00001182656chr3:154898149-154898277129NEP_HUMAN718-750331A:717-74933

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:697
 aligned with NEP_HUMAN | P08473 from UniProtKB/Swiss-Prot  Length:750

    Alignment length:697
                                    63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543       553       563       573       583       593       603       613       623       633       643       653       663       673       683       693       703       713       723       733       743       
            NEP_HUMAN    54 DGICKSSDCIKSAARLIQNMDATTEPCTDFFKYACGGWLKRNVIPETSSRYGNFDILRDELEVVLKDVLQEPKTEDIVAVQKAKALYRSCINESAIDSRGGEPLLKLLPDIYGWPVATENWEQKYGASWTAEKAIAQLNSKYGKKVLINLFVGTDDKNSVNHVIHIDQPRLGLPSRDYYECTGIYKEACTAYVDFMISVARLIRQEERLPIDENQLALEMNKVMELEKEIANATAKPEDRNDPMLLYNKMTLAQIQNNFSLEINGKPFSWLNFTNEIMSTVNISITNEEDVVVYAPEYLTKLKPILTKYSARDLQNLMSWRFIMDLVSSLSRTYKESRNAFRKALYGTTSETATWRRCANYVNGNMENAVGRLYVEAAFAGESKHVVEDLIAQIREVFIQTLDDLTWMDAETKKRAEEKALAIKERIGYPDDIVSNDNKLNNEYLELNYKEDEYFENIIQNLKFSQSKQLKKLREKVDKDEWISGAAVVNAFYSSGRNQIVFPAGILQPPFFSAQQSNSLNYGGIGMVIGHEITHGFDDNGRNFNKDGDLVDWWTQQSASNFKEQSQCMVYQYGNFSWDLAGGQHLNGINTLGENIADNGGLGQAYRAYQNYIKKNGEEKLLPGLDLNHKQLFFLNFAQVWCGTYRPEYAVNSIKTDVHSPGNFRIIGTLQNSAEFSEAFHCRKNSYMNPEKKCRVW 750
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhh........hhhhhhhhhhhhhh.......eeehhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh.hhhhh.hhhhhh....hhhhhhhhhhhhhh.....eeeeeee..eeeeeeeeee.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh.hhhhh.hhhhhh.eeehhhhhhhh..ee..ee.hhhhhhhhhhhhhh.......eeee.hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh.eeeee..hhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhh................eee....eeeee.hhh.........hhhhhhhhhhhhhhhhhhhhhh.hhhh...........hhhhhhhhhhhhhhhhhhhhh..hhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhh.eeehhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh................ Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------------------------------------------------Y-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CP-------------------------------------------------------------------------D--------------------------------------------------------------------------H---------------------------------------------------------------------------------------------------------------------------R--------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ZINC_PROTE---------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.10a   -----------------------------------------------------Exon 1.14  PDB: A:119-146   -------------------------------Exon 1.16  PDB: A:178-217               Exon 1.17b            Exon 1.18  PDB: A:240-284 UniProt: 241-285   Exon 1.19  PDB: A:285-318         Exon 1.20  PDB: A:319-364 UniProt: 320-365    -------------------------------Exon 1.22  PDB: A:396-438 UniProt: 397-439 Exon 1.23  PDB: A:439-471        Exon 1.24  PDB: A:472-498  Exon 1.25  PDB: A:499-533          -------------------Exon 1.27  PDB: A:553-593                --------------------------------------------Exon 1.29a            Exon 1.30b  PDB: A:660-691      Exon 1.31  PDB: A:692-717 -------------------------------- Transcript 1 (1)
           Transcript 1 (2) 1-----------Exon 1.13c  PDB: A:65-119 UniProt: 66-120              --------------------------Exon 1.15b  PDB: A:146-178       -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.21  PDB: A:364-395       -----------------------------------------------------------------------------------------------------------------------------------------Exon 1.26            ---------------------------------------Exon 1.28  PDB: A:593-637 UniProt: 594-638   -------------------------------------------------------------------------------Exon 1.32a  PDB: A:717-749        Transcript 1 (2)
                 4cth A  53 DGICKSSDCIKSAARLIQNMDATTEPCTDFFKYACGGWLKRNVIPETSSRYGNFDILRDELEVVLKDVLQEPKTEDIVAVQKAKALYRSCINESAIDSRGGEPLLKLLPDIYGWPVATENWEQKYGASWTAEKAIAQLNSKYGKKVLINLFVGTDDKNSVNHVIHIDQPRLGLPSRDYYECTGIYKEACTAYVDFMISVARLIRQEERLPIDENQLALEMNKVMELEKEIANATAKPEDRNDPMLLYNKMTLAQIQNNFSLEINGKPFSWLNFTNEIMSTVNISITNEEDVVVYAPEYLTKLKPILTKYSARDLQNLMSWRFIMDLVSSLSRTYKESRNAFRKALYVTTSETATWRRCANYVNGNMENAVGRLYVEAAFAGESKHVVEDLIAQIREVFIQTLDDLTWMDAETKKRAEEKALAIKERIGYPDDIVSNDNKLNNEYLELNYKEDEYFENIIQNLKFSQSKQLKKLREKVDKDEWISGAAVVNAFYSSGRNQIVFPAGILQPPFFSAQQSNSLNYGGIGMVIGHEITHGFDDNGRNFNKDGDLVDWWTQQSASNFKEQSQCMVYQYGNFSWDLAGGQHLNGINTLGENIADNGGLGQAYRAYQNYIKKNGEEKLLPGLDLNHKQLFFLNFAQVWCGTYRPEYAVNSIKTDVHSPKNFRIIGTLQNSAEFSEAFHCRKNSYMNPEKKCRVW 749
                                    62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572       582       592       602       612       622       632       642       652       662       672       682       692       702       712       722       732       742       

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4CTH)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4CTH)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4CTH)

(-) Gene Ontology  (34, 34)

Asymmetric Unit(hide GO term definitions)
Chain A   (NEP_HUMAN | P08473)
molecular function
    GO:0004175    endopeptidase activity    Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain.
    GO:0008238    exopeptidase activity    Catalysis of the hydrolysis of a peptide bond not more than three residues from the N- or C-terminus of a polypeptide chain, in a reaction that requires a free N-terminal amino group, C-terminal carboxyl group or both.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0004222    metalloendopeptidase activity    Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
    GO:0008237    metallopeptidase activity    Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
    GO:0008233    peptidase activity    Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
    GO:0042277    peptide binding    Interacting selectively and non-covalently with peptides, any of a group of organic compounds comprising two or more amino acids linked by peptide bonds.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0008270    zinc ion binding    Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
    GO:0050435    amyloid-beta metabolic process    The chemical reactions and pathways involving amyloid-beta, a glycoprotein associated with Alzheimer's disease, and its precursor, amyloid precursor protein (APP).
    GO:0002003    angiotensin maturation    The process leading to the attainment of the full functional capacity of angiotensin by conversion of renin substrate into mature angiotensin in the blood.
    GO:0071492    cellular response to UV-A    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a UV-A radiation stimulus. UV-A radiation (UV-A light) spans the wavelengths 315 to 400 nm.
    GO:0071493    cellular response to UV-B    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a UV-B radiation stimulus. UV-B radiation (UV-B light) spans the wavelengths 280 to 315 nm.
    GO:0071345    cellular response to cytokine stimulus    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cytokine stimulus.
    GO:0046449    creatinine metabolic process    The chemical reactions and pathways involving creatinine, 2-amino-1,5-dihydro-1-methyl-4H-imidazol-4-one, an end product of creatine metabolism and a normal constituent of urine.
    GO:0001822    kidney development    The process whose specific outcome is the progression of the kidney over time, from its formation to the mature structure. The kidney is an organ that filters the blood and/or excretes the end products of body metabolism in the form of urine.
    GO:0006518    peptide metabolic process    The chemical reactions and pathways involving peptides, compounds of two or more amino acids where the alpha carboxyl group of one is bound to the alpha amino group of another.
    GO:0006508    proteolysis    The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
    GO:0090399    replicative senescence    A cell aging process associated with the dismantling of a cell as a response to telomere shortening and/or cellular aging.
    GO:0019233    sensory perception of pain    The series of events required for an organism to receive a painful stimulus, convert it to a molecular signal, and recognize and characterize the signal. Pain is medically defined as the physical sensation of discomfort or distress caused by injury or illness, so can hence be described as a harmful stimulus which signals current (or impending) tissue damage. Pain may come from extremes of temperature, mechanical damage, electricity or from noxious chemical substances. This is a neurological process.
cellular component
    GO:0030424    axon    The long process of a neuron that conducts nerve impulses, usually away from the cell body to the terminals and varicosities, which are sites of storage and release of neurotransmitter.
    GO:0005903    brush border    The dense covering of microvilli on the apical surface of a epithelial cells in tissues such as the intestine, kidney, and choroid plexus; the microvilli aid absorption by increasing the surface area of the cell.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0030425    dendrite    A neuron projection that has a short, tapering, often branched, morphology, receives and integrates signals from other neurons or from sensory stimuli, and conducts a nerve impulse towards the axon or the cell body. In most neurons, the impulse is conveyed from dendrites to axon via the cell body, but in some types of unipolar neuron, the impulse does not travel via the cell body.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0005925    focal adhesion    Small region on the surface of a cell that anchors the cell to the extracellular matrix and that forms a point of termination of actin filaments.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0005887    integral component of plasma membrane    The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0044306    neuron projection terminus    The specialized, terminal region of a neuron projection such as an axon or a dendrite.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
    GO:0045202    synapse    The junction between a nerve fiber of one neuron and another neuron, muscle fiber or glial cell. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane.
    GO:0008021    synaptic vesicle    A secretory organelle, typically 50 nm in diameter, of presynaptic nerve terminals; accumulates in high concentrations of neurotransmitters and secretes these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane.

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        NEP_HUMAN | P084731dl9 1dmt 1qvd 1r1h 1r1i 1r1j 1y8j 2qpj 2yb9 5jmy

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