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(-) Description

Title :  CRYSTAL STRUCTURE OF HUMAN L-ARGININE:GLYCINE AMIDINOTRANSFERASE IN COMPLEX WITH GLYCINE
 
Authors :  E. Fritsche, A. Humm, R. Huber
Date :  07 Oct 98  (Deposition) - 09 Feb 99  (Release) - 02 Mar 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Transferase, Creatine Biosynthesis, Catalytic Triad, Reaction Mechanism, Novel Fold, Fivefold Pseudosymmetry (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. Fritsche, A. Humm, R. Huber
The Ligand-Induced Structural Changes Of Human L-Arginine:Glycine Amidinotransferase. A Mutational And Crystallographic Study.
J. Biol. Chem. V. 274 3026 1999
PubMed-ID: 9915841  |  Reference-DOI: 10.1074/JBC.274.5.3026

(-) Compounds

Molecule 1
    Cellular Location: CYTOSOLIC
    Chains: A
    EC Number: 2.1.4.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Gene: AT38H
    Expression System Plasmid: PRSETAT38H
    Expression System Strain: BL21 (DE3) PLYSS
    Expression System Taxid: 562
    Expression System Vector: PRSET
    Fragment: RESIDUES 38 - 423
    Gene: AT38H
    Organ: KIDNEY
    Organelle: MITOCHONDRIA
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Strain: BL(21)DE3PLYSS
    Synonym: TRANSAMIDINASE, AT38

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
1GLY1Mod. Amino AcidGLYCINE
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1GLY2Mod. Amino AcidGLYCINE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:300 , MET A:302 , HIS A:303 , SER A:354 , GLY A:402 , HOH A:593BINDING SITE FOR RESIDUE GLY A 500

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5JDW)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Ala A:286 -Pro A:287

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5JDW)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5JDW)

(-) Exons   (0, 0)

(no "Exon" information available for 5JDW)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:361
                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains d5jdwa_ A: L-arginine: glycine amidinotransferase                                                                                                                                                                                                                                                                                                                         SCOP domains
               CATH domains 5jdwA00 A:64-423 L-arginine/glycine Amidinotransferase; Chain A                                                                                                                                                                                                                                                                                                         - CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........eeeeeee............hhhhhh..hhhhhhhhhh......hhhhhhhhhhhhhhhhhhhh...eeee........eee....eee......hhhheeee..eeee.....hhh..hhhh.hhhhhhhhh...eeee.......hhh.........hhhhhhhhhh.............hhheeee..eeee.......hhhhhhhhhhh....eeee..............eeeee..eeee........hhhhhh...eee.................hhhhh..eeee..eeeee...hhhhhhhhh...eeeee....hhhh.......eee.eee......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5jdw A  64 CPVSSYNEWDPLEEVIVGRAENACVPPFTIEVKANTYEKYWPFYQKQGGHYFPKDHLKKAVAEIEEMCNILKTEGVTVRRPDPIDWSLKYKTPDFESTGLYSAMPRDILIVVGNEIIEAPMAWRSRFFEYRAYRSIIKDYFHRGAKWTTAPKPTMADELYNQDYPIHSVEDRHKLAAQGKFVTTEFEPCFDAADFIRAGRDIFAQRSQVTNYLGIEWMRRHLAPDYRVHIISFKDPNPMHIDATFNIIGPGIVLSNPDRPCHQIDLFKKAGWTIITPPTPIIPDDHPLWMSSKWLSMNVLMLDEKRVMVDANEVPIQKMFEKLGITTIKVNIRNANSLGGGFHCWTCDVRRRGTLQSYLDG 500
                                    73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423|
                                                                                                                                                                                                                                                                                                                                                                                                 423|
                                                                                                                                                                                                                                                                                                                                                                                                  500
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 1)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5JDW)

(-) Gene Ontology  (11, 11)

Asymmetric Unit(hide GO term definitions)

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  2.1.4.1
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        GATM_HUMAN | P50440: 1jdw 1jdx 2jdw 2jdx 3jdw 4jdw 6jdw 7jdw 8jdw 9jdw

(-) Related Entries Specified in the PDB File

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