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(-) Description

Title :  CRYSTAL STRUCTURE AND MECHANISM OF L-ARGININE: GLYCINE AMIDINOTRANSFERASE: A MITOCHONDRIAL ENZYME INVOLVED IN CREATINE BIOSYNTHESIS
 
Authors :  A. Humm, E. Fritsche, S. Steinbacher, R. Huber
Date :  24 Jan 97  (Deposition) - 28 Jan 98  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Transferase, Creatine Biosynthesis, Catalytic Triad, Reaction Mechanism, Novel Fold, Fivefold Pseudosymmetry (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Humm, E. Fritsche, S. Steinbacher, R. Huber
Crystal Structure And Mechanism Of Human L-Arginine:Glycine Amidinotransferase: A Mitochondrial Enzyme Involved In Creatine Biosynthesis.
Embo J. V. 16 3373 1997
PubMed-ID: 9218780  |  Reference-DOI: 10.1093/EMBOJ/16.12.3373
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - L-ARGININE:GLYCINE AMIDINOTRANSFERASE
    Cellular Location: INTERMEMBRANE SPACE OF MITOCHONDRIA AND CYTOPLASM
    Cell Line: BL21
    Chains: A
    EC Number: 2.1.4.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Cellular Location: CYTOSOLIC
    Expression System Gene: AT38H
    Expression System Plasmid: PRSETAT38H
    Expression System Strain: BL21 (DE3) PLYSS
    Expression System Taxid: 562
    Expression System Vector: PRSET
    Expression System Vector Type: PBLUESCRIPT DERIVATIVE WITH T7 EXPRESSION ELEMENTS
    Fragment: RESIDUES 64 - 423
    Gene: AT38H
    Mutation: YES
    Organ: KIDNEY
    Organelle: MITOCHONDRIA
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: TRANSAMIDINASE, AT38

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
1ARG1Mod. Amino AcidARGININE
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1ARG2Mod. Amino AcidARGININE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:170 , ALA A:256 , MET A:302 , HIS A:303 , ASP A:305 , ALA A:306 , ARG A:322 , SER A:354 , SER A:355 , GLY A:402 , ALA A:407 , HOH A:601 , HOH A:634 , HOH A:658 , HOH A:668 , HOH A:688BINDING SITE FOR RESIDUE ARG A 500

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4JDW)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Ala A:286 -Pro A:287

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4JDW)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4JDW)

(-) Exons   (0, 0)

(no "Exon" information available for 4JDW)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:361
                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains d4jdwa_ A: L-arginine: glycine amidinotransferase                                                                                                                                                                                                                                                                                                                         SCOP domains
               CATH domains 4jdwA00 A:64-423 L-arginine/glycine Amidinotransferase; Chain A                                                                                                                                                                                                                                                                                                         - CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........eeeeeee............hhhhhh..hhhhhhhhhh......hhhhhhhhhhhhhhhhhhhh...eeee........eee....eee......hhhheeee..eeee.....hhh..hhhhhhhhhhhhhh...eeee.......hhh...........hhhhhhhh.............hhheeee..eeee.......hhhhhhhhhhh....eeee..............eeeee..eeee........hhhhhh...eee..................hhhh..eeee..eeeee...hhhhhhhhh...eeeee....hhhh...hhhheee.eee......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jdw A  64 CPVSSYNEWDPLEEVIVGRAENACVPPFTIEVKANTYEKYWPFYQKQGGHYFPKDHLKKAVAEIEEMCNILKTEGVTVRRPDPIDWSLKYKTPDFESTGLYSAMPRDILIVVGNEIIEAPMAWRSRFFEYRAYRSIIKDYFHRGAKWTTAPKPTMADELYNQDYPIHSVEDRHKLAAQGKFVTTEFEPCFDAADFIRAGRDIFAQRSQVTNYLGIEWMRRHLAPDYRVHIISFKDPNPMHIDATFNIIGPGIVLSNPDRPCHQIDLFKKAGWTIITPPTPIIPDDHPLWMSSKWLSMNVLMLDEKRVMVDANEVPIQKMFEKLGITTIKVNIRNANSLGGGFHAWTCDVRRRGTLQSYLDR 500
                                    73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423|
                                                                                                                                                                                                                                                                                                                                                                                                 423|
                                                                                                                                                                                                                                                                                                                                                                                                  500
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 1)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4JDW)

(-) Gene Ontology  (11, 11)

Asymmetric Unit(hide GO term definitions)

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    Ala A:286 - Pro A:287   [ RasMol ]  
 
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 Related Entries

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UniProtKB/Swiss-Prot
        GATM_HUMAN | P50440: 1jdw 1jdx 2jdw 2jdx 3jdw 5jdw 6jdw 7jdw 8jdw 9jdw

(-) Related Entries Specified in the PDB File

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