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(-) Description

Title :  PKG I'S CARBOYL TERMINAL CYCLIC NUCLEOTIDE BINDING DOMAIN (CNB-B) IN A COMPLEX WITH 8-BR-CGMP
 
Authors :  J. C. Campbell, B. Sankaran, C. W. Kim
Date :  12 Apr 16  (Deposition) - 19 Apr 17  (Release) - 19 Apr 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.49
Chains :  Asym./Biol. Unit :  A
Keywords :  Binding Sites, Cyclic Amp, Cyclic Gmp, Cyclic Gmp-Dependent Protein Kinase Type Ii, Mutagenesis, Site-Directed, Protein Binding, Analogs, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. C. Campbell, B. Sankaran, C. W. Kim
Structural Basis Of Analog Specificity In Cgmp Dependent Protein Kinase I And Ii
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - CGMP-DEPENDENT PROTEIN KINASE 1
    Chains: A
    EC Number: 2.7.11.12
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 219-351
    Gene: PRKG1, PRKG1B, PRKGR1A, PRKGR1B
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: CGK1,CGMP-DEPENDENT PROTEIN KINASE I,CGKI

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 4)

Asymmetric/Biological Unit (3, 4)
No.NameCountTypeFull Name
16J71Ligand/Ion2-AMINO-8-BROMO-9-[(2R,4AR,6R,7R,7AS)-2,7-DIHYDROXY-2-OXOTETRAHYDRO-2H,4H-2LAMBDA~5~-FURO[3,2-D][1,3,2]DIOXAPHOSPHININ-6-YL]-1,9-DIHYDRO-6H-PURIN-6-ONE
2CA2Ligand/IonCALCIUM ION
3NA1Ligand/IonSODIUM ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:296 , ARG A:297 , LEU A:299 , PHE A:305 , GLY A:306 , GLU A:307 , LYS A:308 , ALA A:309 , ARG A:316 , THR A:317 , ALA A:318 , TYR A:351 , HOH A:530 , HOH A:550 , HOH A:569binding site for residue 6J7 A 401
2AC2SOFTWAREGLY A:342 , ASP A:344 , HOH A:516 , HOH A:573 , HOH A:606binding site for residue CA A 402
3AC3SOFTWARELYS A:232 , ARG A:269 , ASP A:271 , ASP A:314binding site for residue CA A 403
4AC4SOFTWARELYS A:308 , GLN A:311 , GLU A:313 , HOH A:533 , HOH A:578 , HOH A:591binding site for residue NA A 404

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5JAX)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5JAX)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5JAX)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5JAX)

(-) Exons   (0, 0)

(no "Exon" information available for 5JAX)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:130
                                                                                                                                                                  
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhh.hhhhhh.hhhhhhhhhhhheeeee....eee.......eeeeeee..eeeee........eeeeee....ee.hhhhh.......eeee...eeeeeeehhhhhhhh..hhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5jax A 222 IKHTEYMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGTVNVTREDSPSEDPVFLRTLGKGDWFGEKALQGEDVRTANVIAAEAVTCLVIDRDSFKHLIGGLDDVSNKAY 351
                                   231       241       251       261       271       281       291       301       311       321       331       341       351
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5JAX)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5JAX)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5JAX)

(-) Gene Ontology  (29, 29)

Asymmetric/Biological Unit(hide GO term definitions)

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  5jax
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  KGP1_HUMAN | Q13976
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  2.7.11.12
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        KGP1_HUMAN | Q13976: 1zxa 3nmd 3ocp 3od0 3ogj 4ku7 4ku8 4qx5 4qxk 4r4l 4r4m 4z07 5j48

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5JAX)