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(-) Description

Title :  STRUCTURES OF PKGI REVEAL A CGMP-SELECTIVE ACTIVATION MECHANISM
 
Authors :  G. Y. Huang, J. J. Kim, A. S. Reger, R. Lorenz, E. W. Moon, D. E. Casteel, B. F. W. Herberg, C. Kim
Date :  21 May 13  (Deposition) - 15 Jan 14  (Release) - 29 Jan 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.99
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Keywords :  Cyclic Nucleotide Binding Domain, Cgmp, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. Y. Huang, J. J. Kim, A. S. Reger, R. Lorenz, E. W. Moon, C. Zhao, D. E. Casteel, D. Bertinetti, B. Vanschouwen, R. Selvaratnam, J. W. Pflugrath, B. Sankaran, G. Melacini, F. W. Herberg, C. Kim
Structural Basis For Cyclic-Nucleotide Selectivity And Cgmp-Selective Activation Of Pkg I.
Structure V. 22 116 2014
PubMed-ID: 24239458  |  Reference-DOI: 10.1016/J.STR.2013.09.021

(-) Compounds

Molecule 1 - CGMP-DEPENDENT PROTEIN KINASE 1
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PQTEV
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: CARBOXYL CYCLIC NUCLEOTIDE BINDING DOMAIN, UNP RESIDUES 204-354
    Gene: PRKG1, PRKG1B, PRKGR1A, PRKGR1B
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: CGK 1, CGK1, CGMP-DEPENDENT PROTEIN KINASE I, CGKI

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (1x): A  
Biological Unit 2 (1x):  B 
Biological Unit 3 (1x):   C

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 3)

Asymmetric Unit (1, 3)
No.NameCountTypeFull Name
1GLY3Mod. Amino AcidGLYCINE
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1GLY2Mod. Amino AcidGLYCINE
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1GLY1Mod. Amino AcidGLYCINE
Biological Unit 3 (0, 0)
No.NameCountTypeFull Name
1GLY-1Mod. Amino AcidGLYCINE

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:226 , GLU A:229 , PHE A:230 , HOH A:549 , HOH A:572BINDING SITE FOR RESIDUE GLY A 401
2AC2SOFTWAREVAL A:346 , ALA A:350 , HOH A:558 , HOH A:628BINDING SITE FOR RESIDUE GLY A 402
3AC3SOFTWAREGLY A:217 , SER A:218 , LEU A:221 , ARG B:297 , THR B:298 , HOH B:534BINDING SITE FOR RESIDUE GLY B 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4KU8)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4KU8)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4KU8)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4KU8)

(-) Exons   (0, 0)

(no "Exon" information available for 4KU8)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:152
                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhh......hhhhhhhhhh..eeeee....eee.......eeeeeee..eeeee........eeeeee....eehhhhhh.......eeee...eeeeeeehhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ku8 A 217 GSTGLIKHTEYMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGTVNVTREDSPSEDPVFLRTLGKGDWFGEKALQGEDVRTANVIAAEAVTCLVIDRDSFKHLIGGLDDVSNKAYEDAEAKAKYEAEAAFGG 402
                                   226       236       246       256       266       276       286       296       306       316       326       336       346       356       366| 
                                                                                                                                                                               366| 
                                                                                                                                                                                401 


Chain B from PDB  Type:PROTEIN  Length:109
                                                                                                                                             
               SCOP domains d4ku8b_ B: automated matches                                                                                  SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhh.....hhhhhhh..eeeee....eee....ee.eeeeeee..eeeee........eeeeee....eehhhhhh..ee...eeee...eeeeeee....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 4ku8 B 225 TEYMEFLKSVPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGTVNVTREDSPSEDPVFLRTLGKGDWFGEKALQGEDVRTANVIAAEAVTCLVIDRDSFKHG 401
                                   234|      250       260       270       280       290       300       310       320       330       ||
                                   234|                                                                                              338|
                                    241                                                                                               401


Chain C from PDB  Type:PROTEIN  Length:122
                                                                                                                                                          
               SCOP domains d4ku8c_ C: automated matches                                                                                               SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhh..eeeee....eee.......eeeeeee..eeee....eeeee....ee.hhhhhh......eeee...eeeeeeehhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ku8 C 217 GSTGLIKHTEYMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGTVNVTREDVFLRTLGKGDWFGEKALQGEDVRTANVIAAEAVTCLVIDRDSFKHLIGGLD 344
                                   226       236       246       256       266       276       286||     302       312       322       332       342  
                                                                                                287|                                                  
                                                                                                 294
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4KU8)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4KU8)

(-) Gene Ontology  (29, 29)

Asymmetric Unit(hide GO term definitions)

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  KGP1_HUMAN | Q13976
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        KGP1_HUMAN | Q13976: 1zxa 3nmd 3ocp 3od0 3ogj 4ku7 4qx5 4qxk 4r4l 4r4m 4z07 5j48 5jax

(-) Related Entries Specified in the PDB File

4ku7