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(-) Description

Title :  CRYSTAL STRUCTURE OF MYCOBACTERIUM AVIUM SERB2 MUTANT D343N
 
Authors :  S. Shree, R. Ramachandran
Date :  16 Mar 16  (Deposition) - 27 Apr 16  (Release) - 27 Apr 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Had Family, Phosphoserine Phosphatase, Catalytic Site Mutant, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Shree, R. Ramachandran
Crystal Structure Of Mycobacterium Avium Serb2 Mutant D343N (Mav_3907) At Ph 6. 6
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PHOSPHOSERINE PHOSPHATASE
    Chains: A
    EC Number: 3.1.3.3
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: C41(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 5-400
    Gene: SERB, MAV_3907
    Mutation: YES
    Organism Scientific: MYCOBACTERIUM AVIUM (STRAIN 104)
    Organism Taxid: 243243
    Strain: 104
    Synonym: PSPASE,O-PHOSPHOSERINE PHOSPHOHYDROLASE

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
1MG1Ligand/IonMAGNESIUM ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1MG-1Ligand/IonMAGNESIUM ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:187 , ASP A:189 , ASN A:343 , HOH A:629 , HOH A:635 , HOH A:690binding site for residue MG A 501

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5IT4)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric Unit
No.Residues
1Arg A:105 -Pro A:106
2Tyr A:135 -Pro A:136
3Gly A:312 -Pro A:313

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5IT4)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5IT4)

(-) Exons   (0, 0)

(no "Exon" information available for 5IT4)

(-) Sequences/Alignments

Asymmetric Unit
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(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:395
                                                                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeee...hhhhhhhhhhh....eeeeeeeeee..eeeeeeeeeehhhhhhhhhhhhhhhhhhhhhh.eeeeee...........eeeeeee...hhhhhhhhhhhhhhh..eeeeeeeee....eeeeeeee....hhhhhhhhhhhhhhhhh.eeeeee.........eeee.........hhhhhhhhhh.hhhhhhhhhhhhhh...hhhhhhhhhhhh.....hhhhhhhhh......hhhhhhhhhhhh..eeeeeeeeehhhhhhhhhhh...eeeee.eeee..eeeeee.....hhhhhhhhhhhhhhhhh.hhh.eeeee.hhhhhhhhhhh.eeeee..hhhhhh...eee.....hhhhhhh..hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5it4 A   5 PKVSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVCCPADVADGPALRHDVEAAIRKVGLDVSIERSDVPIIREPSTHTIFVLGRPITAAAFGAVAREVAALGVNIDLIRGVSDYPVIGLELRVSVPPGADGALRTALNRVSSEEHVDVAVEDYTLERRAKRLIVFDVDSTLVQGEVIEMLAAKAGAEGQVAAITDAAMRGELDFAQSLQQRVATLAGLPATVIDEVAGQLELMPGARTTLRTLRRLGYACGVVSGGFRRIIEPLAEELMLDYVAANELEIVDGTLTGRVVGPIIDRAGKATALREFAQRAGVPMAQTVAVGNGANDIDMLAAAGLGIAFNAKPALREVADASLSHPYLDTVLFLLGVTRGEIEAADAID 400
                                    14        24        34        44        54        64        74        84  ||    95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395     
                                                                                                             87|                                                                                                                                                                                                                                                                                                                       
                                                                                                              89
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5IT4)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5IT4)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5IT4)

(-) Gene Ontology  (10, 10)

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        SERB_MYCA1 | A0QJI1: 3p96 5is2 5it0 5jjb 5jlp 5jlr 5jma 5t41

(-) Related Entries Specified in the PDB File

5is2 5it0