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(-) Description

Title :  CRYSTAL STRUCTURE OF MYCOBACTERIUM AVIUM SERB2 AT PH 6.6
 
Authors :  S. Shree, R. Ramachandran
Date :  15 Mar 16  (Deposition) - 27 Apr 16  (Release) - 27 Apr 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.88
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Had Family, Phosphoserine Phosphatase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Shree, R. Ramachandran
Crystal Structure Of Mycobacterium Avium Serb2 (Mav_3907) A Ph 6. 6
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PHOSPHOSERINE PHOSPHATASE
    Chains: A
    EC Number: 3.1.3.3
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PAVA0421
    Expression System Strain: C41(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 5-400
    Gene: SERB, MAV_3907
    Mutation: YES
    Organism Scientific: MYCOBACTERIUM AVIUM (STRAIN 104)
    Organism Taxid: 243243
    Strain: 104
    Synonym: PSPASE,O-PHOSPHOSERINE PHOSPHOHYDROLASE

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
1MG1Ligand/IonMAGNESIUM ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1MG-1Ligand/IonMAGNESIUM ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:187 , ASP A:189 , ASP A:343 , HOH A:623 , HOH A:650 , HOH A:681binding site for residue MG A 501

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5IS2)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric Unit
No.Residues
1Arg A:105 -Pro A:106
2Tyr A:135 -Pro A:136
3Gly A:312 -Pro A:313

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5IS2)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5IS2)

(-) Exons   (0, 0)

(no "Exon" information available for 5IS2)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:395
                                                                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeee...hhhhhhhhhhhh...eeeeeeeeee..eeeeeeeeeehhhhhhhhhhhhhhhhhhhhh..eeeeee............eeeeeee...hhhhhhhhhhhhhhh..eeeeeeeee....eeeeeeee....hhhhhhhhhhhhhhhhh.eeeeee.........eeee.........hhhhhhhhhh....hhhhhhhhhh...hhhhhhhhhhhh.....hhhhhhhhh......hhhhhhhhhhhh..eeeeeeeeehhhhhhhhhhh...eeeee.eeee..eeeeee.....hhhhhhhhhhhhhhhhh.hhh.eeeee.hhhhhhhhhhh.eeeee..hhhhhh...eee.....hhhhhhh..hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5is2 A   5 PKVSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVCCPADVADGPALRHDVEAAIRKVGLDVSIERSDDVPIIREPSTHTIFVLGRPITAAAFGAVAREVAALGVNIDLIRGVSDYPVIGLELRVSVPPGADGALRTALNRVSSEEHVDVAVEDYTLERRAKRLIVFDVDSTLVQGEVIEMLAAKAGAEGQVAITDAAMRGELDFAQSLQQRVATLAGLPATVIDEVAGQLELMPGARTTLRTLRRLGYACGVVSGGFRRIIEPLAEELMLDYVAANELEIVDGTLTGRVVGPIIDRAGKATALREFAQRAGVPMAQTVAVGDGANDIDMLAAAGLGIAFNAKPALREVADASLSHPYLDTVLFLLGVTRGEIEAADAID 400
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204      |215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395     
                                                                                                                                                                                                                                        211|                                                                                                                                                                                           
                                                                                                                                                                                                                                         213
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5IS2)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5IS2)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5IS2)

(-) Gene Ontology  (10, 10)

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  Cis Peptide Bonds
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 Related Entries

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        SERB_MYCA1 | A0QJI1: 3p96 5it0 5it4 5jjb 5jlp 5jlr 5jma 5t41

(-) Related Entries Specified in the PDB File

5it0 5it4