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(-) Description

Title :  HUMAN CYTOCHROME P450 17A1 BOUND TO INHIBITOR VT-464
 
Authors :  E. E. Scott, E. M. Petrunak
Date :  14 Mar 16  (Deposition) - 15 Mar 17  (Release) - 17 May 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.10
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Keywords :  Oxidoreductase, Inhibitor Complex, Lyase-Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. M. Petrunak, S. A. Rogers, J. Aube, E. E. Scott
Structural And Functional Evaluation Of Clinically Relevant Inhibitors Of Steroidogenic Cytochrome P450 17A1.
Drug Metab. Dispos. V. 45 635 2017
PubMed-ID: 28373265  |  Reference-DOI: 10.1124/DMD.117.075317

(-) Compounds

Molecule 1 - STEROID 17-ALPHA-HYDROXYLASE/17,20 LYASE
    Chains: A, B, C, D
    EC Number: 1.14.14.19, 4.1.2.30
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 24-508
    Gene: CYP17A1, CYP17, S17AH
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: 17-ALPHA-HYDROXYPROGESTERONE ALDOLASE, CYPXVII, CYTOCHROME P450 17A1, CYTOCHROME P450-C17, CYTOCHROME P450C17, STEROID 17-ALPHA- MONOOXYGENASE

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A   
Biological Unit 2 (1x):  B  
Biological Unit 3 (1x):   C 
Biological Unit 4 (1x):    D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 8)

Asymmetric Unit (2, 8)
No.NameCountTypeFull Name
16D84Ligand/IonVT-464
2HEM4Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
Biological Unit 1 (2, 2)
No.NameCountTypeFull Name
16D81Ligand/IonVT-464
2HEM1Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
Biological Unit 2 (2, 2)
No.NameCountTypeFull Name
16D81Ligand/IonVT-464
2HEM1Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
Biological Unit 3 (2, 2)
No.NameCountTypeFull Name
16D81Ligand/IonVT-464
2HEM1Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
Biological Unit 4 (2, 2)
No.NameCountTypeFull Name
16D81Ligand/IonVT-464
2HEM1Ligand/IonPROTOPORPHYRIN IX CONTAINING FE

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:96 , ILE A:112 , ALA A:113 , TRP A:121 , ARG A:125 , ILE A:299 , GLY A:303 , THR A:307 , ILE A:371 , HIS A:373 , PRO A:434 , PHE A:435 , ARG A:440 , CYS A:442 , ILE A:443 , ALA A:448 , 6D8 A:601binding site for residue HEM A 600
2AC2SOFTWAREALA A:105 , ASN A:202 , ILE A:205 , ILE A:206 , ARG A:239 , ASP A:298 , GLY A:301 , ALA A:302 , GLU A:305 , THR A:306 , ALA A:367 , ILE A:371 , VAL A:482 , VAL A:483 , HEM A:600binding site for residue 6D8 A 601
3AC3SOFTWAREARG B:96 , ILE B:112 , ALA B:113 , TRP B:121 , ARG B:125 , GLY B:303 , LEU B:361 , VAL B:366 , LEU B:370 , ILE B:371 , HIS B:373 , PRO B:434 , PHE B:435 , ARG B:440 , CYS B:442 , ALA B:448 , LEU B:452 , 6D8 B:601binding site for residue HEM B 600
4AC4SOFTWAREALA B:105 , PHE B:114 , ASN B:202 , ILE B:205 , ILE B:206 , ARG B:239 , GLY B:301 , ALA B:302 , GLU B:305 , THR B:306 , ALA B:367 , ILE B:371 , VAL B:482 , HEM B:600binding site for residue 6D8 B 601
5AC5SOFTWAREARG C:96 , ILE C:112 , ALA C:113 , TRP C:121 , ARG C:125 , ILE C:299 , GLY C:303 , VAL C:310 , VAL C:366 , ALA C:367 , LEU C:370 , ILE C:371 , HIS C:373 , PRO C:434 , PHE C:435 , ARG C:440 , CYS C:442 , ALA C:448 , 6D8 C:601binding site for residue HEM C 600
6AC6SOFTWAREALA C:105 , PHE C:114 , ASN C:202 , ILE C:205 , ILE C:206 , ARG C:239 , ASP C:298 , ALA C:302 , THR C:306 , ALA C:367 , ILE C:371 , VAL C:482 , VAL C:483 , HEM C:600binding site for residue 6D8 C 601
7AC7SOFTWAREARG D:96 , ILE D:112 , ALA D:113 , TRP D:121 , ARG D:125 , ILE D:299 , GLY D:303 , THR D:306 , THR D:307 , VAL D:310 , VAL D:366 , LEU D:370 , HIS D:373 , PRO D:434 , PHE D:435 , ARG D:440 , CYS D:442 , ALA D:448 , 6D8 D:601binding site for residue HEM D 600
8AC8SOFTWAREALA D:105 , ASN D:202 , ILE D:205 , ILE D:206 , ARG D:239 , GLY D:297 , ASP D:298 , GLY D:301 , ALA D:302 , THR D:306 , ILE D:371 , VAL D:482 , VAL D:483 , HEM D:600binding site for residue 6D8 D 601

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5IRV)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5IRV)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5IRV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5IRV)

(-) Exons   (0, 0)

(no "Exon" information available for 5IRV)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:471
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeee.......hhhhhhhhhhhhhh.eeeeee..eeeeee.hhhhhhhhhh...........hhhhhhhh...........hhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhh...eee.hhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhh........hhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhh........ee....eee..eee....eeeehhhhhhh...........hhhhhh..................hhhhh..hhhhhhhhhhhhhhhhhhheeee............ee...ee.....eeeeehhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5irv A  31 LLSLPLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMGTKTTVIVGHHQLAKEVLIKKGKDFSGRPQMATLDIASNNRKGIAFADSGAHWQLHRRLAMATFALFKDGDQKLEKIICQEISTLCDMLATHNGQSIDISFPVFVAVTNVISLICFNTSYKNGDPELNVIQNYNEGIIDNLSKDSLVDLVPWLKIFPNKTLEKLKSHVKIRNDLLNKILENYKEKFRSDSITNMLDTLMQAKMNSDNGPDQDSELLSDNHILTTIGDIFGAGVETTTSVVKWTLAFLLHNPQVKKKLYEEIDQNVGFSRTPTISDRNRLLLLEATIREVLRLRPVAPMLIPHKANVDSSIGEFAVDKGTEVIINLWALHHNEKEWHQPDQFMPERFLNPAGTQLISPSVSYLPFGAGPRSCIGEILARQELFLIMAWLLQRFDLEVPDDGQLPSLEGIPKVVFLIDSFKVKIKVRQAWREAQA 504
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270    || 283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503 
                                                                                                                                                                                                                                                                              275|                                                                                                                                                                                                                                 
                                                                                                                                                                                                                                                                               279                                                                                                                                                                                                                                 


Chain B from PDB  Type:PROTEIN  Length:471
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeee.......hhhhhhhhhhhhhh.eeeeee..eeeeee.hhhhhhhhhh...........hhhhhhhh...........hhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhh...eee.hhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhh........hhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhh.hhhhhhhhhhhhhhh........ee....eee..eee....eeeehhhhhhh...........hhhhhh..................hhhhh..hhhhhhhhhhhhhhhhhhheeee............ee...ee.....eeeeehhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5irv B  31 LLSLPLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMGTKTTVIVGHHQLAKEVLIKKGKDFSGRPQMATLDIASNNRKGIAFADSGAHWQLHRRLAMATFALFKDGDQKLEKIICQEISTLCDMLATHNGQSIDISFPVFVAVTNVISLICFNTSYKNGDPELNVIQNYNEGIIDNLSKDSLVDLVPWLKIFPNKTLEKLKSHVKIRNDLLNKILENYKEKFRSDSITNMLDTLMQAKMNSDNGPDQDSELLSDNHILTTIGDIFGAGVETTTSVVKWTLAFLLHNPQVKKKLYEEIDQNVGFSRTPTISDRNRLLLLEATIREVLRLRPVAPMLIPHKANVDSSIGEFAVDKGTEVIINLWALHHNEKEWHQPDQFMPERFLNPAGTQLISPSVSYLPFGAGPRSCIGEILARQELFLIMAWLLQRFDLEVPDDGQLPSLEGIPKVVFLIDSFKVKIKVRQAWREAQA 504
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270    || 283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503 
                                                                                                                                                                                                                                                                              275|                                                                                                                                                                                                                                 
                                                                                                                                                                                                                                                                               279                                                                                                                                                                                                                                 


Chain C from PDB  Type:PROTEIN  Length:475
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeee.......hhhhhhhhhhhhhh.eeeeee..eeeeee.hhhhhhhhhh...........hhhhhhhh...........hhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhh...eee.hhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhh.hhhhhhhhhhhhhhh........ee....eee..eee....eeeehhhhhhhh..........hhhhhh..................hhhhh..hhhhhhhhhhhhhhhhhhheeee............ee...ee.....eeeeehhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5irv C  30 SLLSLPLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMGTKTTVIVGHHQLAKEVLIKKGKDFSGRPQMATLDIASNNRKGIAFADSGAHWQLHRRLAMATFALFKDGDQKLEKIICQEISTLCDMLATHNGQSIDISFPVFVAVTNVISLICFNTSYKNGDPELNVIQNYNEGIIDNLSKDSLVDLVPWLKIFPNKTLEKLKSHVKIRNDLLNKILENYKEKFRSDSITNMLDTLMQAKMNSDNGNAGPDQDSELLSDNHILTTIGDIFGAGVETTTSVVKWTLAFLLHNPQVKKKLYEEIDQNVGFSRTPTISDRNRLLLLEATIREVLRLRPVAPMLIPHKANVDSSIGEFAVDKGTEVIINLWALHHNEKEWHQPDQFMPERFLNPAGTQLISPSVSYLPFGAGPRSCIGEILARQELFLIMAWLLQRFDLEVPDDGQLPSLEGIPKVVFLIDSFKVKIKVRQAWREAQA 504
                                    39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499     


Chain D from PDB  Type:PROTEIN  Length:472
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeee.......hhhhhhhhhhhhhh.eeeeee..eeeeee.hhhhhhhhhh...........hhhhhhhh...........hhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhh...eee.hhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhh...hhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhh........ee....eee..eee....eeeehhhhhhh...........hhhhhh..................hhhhh..hhhhhhhhhhhhhhhhhhheeee............ee...ee.....eeeeehhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5irv D  30 SLLSLPLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMGTKTTVIVGHHQLAKEVLIKKGKDFSGRPQMATLDIASNNRKGIAFADSGAHWQLHRRLAMATFALFKDGDQKLEKIICQEISTLCDMLATHNGQSIDISFPVFVAVTNVISLICFNTSYKNGDPELNVIQNYNEGIIDNLSKDSLVDLVPWLKIFPNKTLEKLKSHVKIRNDLLNKILENYKEKFRSDSITNMLDTLMQAKMNSDNGPDQDSELLSDNHILTTIGDIFGAGVETTTSVVKWTLAFLLHNPQVKKKLYEEIDQNVGFSRTPTISDRNRLLLLEATIREVLRLRPVAPMLIPHKANVDSSIGEFAVDKGTEVIINLWALHHNEKEWHQPDQFMPERFLNPAGTQLISPSVSYLPFGAGPRSCIGEILARQELFLIMAWLLQRFDLEVPDDGQLPSLEGIPKVVFLIDSFKVKIKVRQAWREAQA 504
                                    39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269     ||282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502  
                                                                                                                                                                                                                                                                               275|                                                                                                                                                                                                                                 
                                                                                                                                                                                                                                                                                279
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5IRV)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5IRV)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5IRV)

(-) Gene Ontology  (57, 57)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        CP17A_HUMAN | P05093: 2c17 3ruk 3swz 4nkv 4nkw 4nkx 4nky 4nkz 5irq

(-) Related Entries Specified in the PDB File

5irq