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(-) Description

Title :  STRUCTURE OF THE SPX-TTM DOMAIN FRAGMENT OF THE YEAST INORGANIC POLYPHOPHATE POLYMERASE VTC4 (FORM A).
 
Authors :  R. Wild, M. Hothorn
Date :  01 Mar 16  (Deposition) - 27 Apr 16  (Release) - 28 Sep 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.99
Chains :  Asym./Biol. Unit :  A
Keywords :  Helical Bundle, Alpha-Helical Hairpin, Inositol Phosphate Binding, Protein-Protein Interaction, Chaperone, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Wild, R. Gerasimaite, J. Y. Jung, V. Truffault, I. Pavlovic, A. Schmidt, A. Saiardi, H. J. Jessen, Y. Poirier, M. Hothorn, A. Mayer
Control Of Eukaryotic Phosphate Homeostasis By Inositol Polyphosphate Sensor Domains.
Science V. 352 986 2016
PubMed-ID: 27080106  |  Reference-DOI: 10.1126/SCIENCE.AAD9858

(-) Compounds

Molecule 1 - VACUOLAR TRANSPORTER CHAPERONE 4
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PMH-HT
    Expression System Taxid: 469008
    Expression System Variant: RIL
    Expression System Vector Type: PLASMID
    Fragment: SPX DOMAIN, UNP RESIDUES 2-480
    Gene: VTC4, PHM3, YJL012C, J1345
    Mutation: YES
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 4932
    Synonym: PHOSPHATE METABOLISM PROTEIN 3

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric/Biological Unit (1, 4)
No.NameCountTypeFull Name
1SO44Ligand/IonSULFATE ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:241 , ARG A:264 , LYS A:281 , SER A:457 , LYS A:458 , PHE A:459 , SO4 A:502binding site for residue SO4 A 501
2AC2SOFTWAREASN A:91 , ARG A:264 , ARG A:266 , TYR A:359 , ARG A:361 , LYS A:458 , SO4 A:501binding site for residue SO4 A 502
3AC3SOFTWARETHR A:41 , GLN A:42binding site for residue SO4 A 503
4AC4SOFTWAREASN A:91 , LYS A:200 , LYS A:281 , SER A:292 , LYS A:294binding site for residue SO4 A 504

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5IIG)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Trp A:407 -Pro A:408
2Leu A:478 -Pro A:479

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5IIG)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5IIG)

(-) Exons   (0, 0)

(no "Exon" information available for 5IIG)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:467
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhh..hhhhh....hhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhh...eeeeeeeeee...hhhhhhhhhh...................eeeeeeee...hhhhhhhhhh...eeeeeeeee......eeeeeeeeeeee..eeeeeeeeeeeehhhhhhhhhh..hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh..eeeeeeeeeeeee.......eeeeeeeeeeeee................................eee...eeeeeeeeee.....hhhhhhhhh...eee....hhhhhhhhhhh............ Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5iig A   1 GKFGEHLSKSLIRQYSYYYISYDDLKTELEDNLSKNNGQWTQELETDFLESLEIELDKVYTFCKVKHSEVFRRVKEVQEQVQHTVRLLDSNNPPTQLDFEILEEELSDIIADVHDLAKFSRLNYTGFQKIIKKHDKKTGFILKPVFQVRLDSKPFFKENYDELVVKISQLYDIARTSGRQNFVRQTTKYWVHPDNITELKLIILKHLPVLVFNTNKEFEREDSAITSIYFDNENLDLYYGRLRKDEGAEAHRLRWYGGMSTDTIFVERKTHREDWTGEKSVKARFALKERHVNDFLKGKYTVDQVFAKMRKEGKKPMNEIENLEALASEIQYVMLKKKLRPVVRSFYNRTAFQLPGDARVRISLDTELTMVREDNFDGVDRTHKNWRRTDIGVDWPFKQLDDKDICRFPYAVLNVKLQTQLGQEPPEWVRELVGSHLVEPVPKFSKFIHGVATLLNDKVDSIPFWLP 479
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       
                                                                                                                                                                                                            179|                                                                                                                                                                                                                                                                                               
                                                                                                                                                                                                             192
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5IIG)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5IIG)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5IIG)

(-) Gene Ontology  (15, 15)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

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        VTC4_YEAST | P47075: 3g3q 3g3r 3g3t 3g3u 5iiq 5iit 5lnc

(-) Related Entries Specified in the PDB File

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