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(-) Description

Title :  PRODUCT-COMPLEX OF E.COLI 5-AMINO LAEVULINIC ACID DEHYDRATASE
 
Authors :  E. Norton, P. T. Erskine, P. M. Shoolingin-Jordan, J. B. Cooper
Date :  23 Nov 16  (Deposition) - 07 Dec 16  (Release) - 25 Jan 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (8x)
Keywords :  Dehydratase, Lyase, Tetrapyrrole Biosynthesis (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. Mills-Davies, D. Butler, E. Norton, D. Thompson, M. Sarwar, J. Guo, R. Gill, N. Azim, A. Coker, S. P. Wood, P. T. Erskine, L. Coates, J. B. Cooper, N. Rashid, M. Akhtar, P. M. Shoolingin-Jordan
Structural Studies Of Substrate And Product Complexes Of 5-Aminolaevulinic Acid Dehydratase From Humans, Escherichia Coli And The Hyperthermophile Pyrobaculum Calidifontis.
Acta Crystallogr D Struct V. 73 9 2017 Biol
PubMed-ID: 28045381  |  Reference-DOI: 10.1107/S2059798316019525

(-) Compounds

Molecule 1 - DELTA-AMINOLEVULINIC ACID DEHYDRATASE
    Chains: A
    EC Number: 4.2.1.24
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: HEMB, NCF, B0369, JW0361
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562
    Synonym: ALADH,PORPHOBILINOGEN SYNTHASE

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (8x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 7)

Asymmetric Unit (3, 7)
No.NameCountTypeFull Name
1GOL3Ligand/IonGLYCEROL
2PBG1Ligand/Ion3-[5-(AMINOMETHYL)-4-(CARBOXYMETHYL)-1H-PYRROL-3-YL]PROPANOIC ACID
3ZN3Ligand/IonZINC ION
Biological Unit 1 (2, 32)
No.NameCountTypeFull Name
1GOL24Ligand/IonGLYCEROL
2PBG8Ligand/Ion3-[5-(AMINOMETHYL)-4-(CARBOXYMETHYL)-1H-PYRROL-3-YL]PROPANOIC ACID
3ZN-1Ligand/IonZINC ION

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:120 , CYS A:122 , SER A:165 , LYS A:195 , TYR A:201 , PHE A:204 , ARG A:205 , ARG A:216 , GLN A:220 , LYS A:247 , TYR A:270 , VAL A:272 , SER A:273 , TYR A:312 , ZN A:403 , HOH A:522binding site for residue PBG A 401
2AC2SOFTWAREGLU A:40 , HIS A:84binding site for residue ZN A 402
3AC3SOFTWARECYS A:120 , CYS A:122 , CYS A:130 , PBG A:401binding site for residue ZN A 403
4AC4SOFTWAREGLU A:232 , HOH A:516 , HOH A:535 , HOH A:560 , HOH A:584 , HOH A:740binding site for residue ZN A 404
5AC5SOFTWARELEU A:295 , GLU A:296 , HOH A:591binding site for residue GOL A 405
6AC6SOFTWAREGLU A:290 , GLU A:291 , PHE A:313 , ASP A:316 , LYS A:320 , ILE A:322 , HOH A:669binding site for residue GOL A 406
7AC7SOFTWAREALA A:197 , SER A:199 , ASP A:215 , ARG A:216 , LYS A:217 , HOH A:530binding site for residue GOL A 407

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5MHB)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Lys A:247 -Pro A:248

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5MHB)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5MHB)

(-) Exons   (0, 0)

(no "Exon" information available for 5MHB)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:323
                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhh....hhh.eeeeeeee......ee.......eeee..hhhhhhhhhhhh...eeeeeee.......hhhhhh..hhhhhhhhhhhhhh...eeeeee.............ee..eehhhhhhhhhhhhhhhhhhhh..eeee.....hhhhhhhhhhhhh.....ee....ee..hhhhhhhhhhhh...............hhhhhhhhhhhhhhh....eeee....hhhhhhhhhh.....eeee.hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh...eee..hhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5mhb A   2 TDLIQRPRRLRKSPALRAMFEETTLSLNDLVLPIFVEEEIDDYKAVEAMPGVMRIPEKHLAREIERIANAGIRSVMTFGISHHTDETGSDAWREDGLVARMSRICKQTVPEMIVMSDTCFCEYTSHGHCGVLCEHGVDNDATLENLGKQAVVAAAAGADFIAPSAAMDGQVQAIRQALDAAGFKDTAIMSYSTKFASSFYGPFREAAGSALKGDRKSYQMNPMNRREAIRESLLDEAQGADCLMVKPAGAYLDIVRELRERTELPIGAYQVSGEYAMIKFAALAGAIDEEKVVLESLGSIKRAGADLIFSYFALDLAEKKILR 324
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5MHB)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5MHB)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5MHB)

(-) Gene Ontology  (11, 11)

Asymmetric Unit(hide GO term definitions)

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    Lys A:247 - Pro A:248   [ RasMol ]  
 
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UniProtKB/Swiss-Prot
        HEM2_ECOLI | P0ACB2: 1b4e 1i8j 1l6s 1l6y

(-) Related Entries Specified in the PDB File

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