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(-) Description

Title :  STRCUTURE OF MOUSE ACIREDUCTONE DIOXYGENASE BOUND TO CO2+ AND 2-KETO-4-(METHYLTHIO)-BUTYRIC ACID
 
Authors :  A. R. Deshpande, K. Wagenpfeil, T. C. Pochapsky, G. A. Petsko, D. Ringe
Date :  19 Feb 16  (Deposition) - 09 Mar 16  (Release) - 23 Mar 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.94
Chains :  Asym./Biol. Unit :  A
Keywords :  2-Keto-4-(Methylthio)-Butyric Acid, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. R. Deshpande, K. Wagenpfeil, T. C. Pochapsky, G. A. Petsko, D. Ringe
Metal-Dependent Function Of A Mammalian Acireductone Dioxygenase.
Biochemistry V. 55 1398 2016
PubMed-ID: 26858196  |  Reference-DOI: 10.1021/ACS.BIOCHEM.5B01319

(-) Compounds

Molecule 1 - 1,2-DIHYDROXY-3-KETO-5-METHYLTHIOPENTENE DIOXYGENASE
    Chains: A
    EC Number: 1.13.11.54
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMH4
    Expression System Strain: BL21-CODONPLUS(DE3)-RIPL STRAIN
    Expression System Taxid: 469008
    Gene: ADI1, MTCBP1
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Synonym: ACIREDUCTONE DIOXYGENASE (FE(2+)-REQUIRING),FE-ARD,MEMBRANE- TYPE 1 MATRIX METALLOPROTEINASE CYTOPLASMIC TAIL-BINDING PROTEIN 1, MTCBP-1

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
1CO1Ligand/IonCOBALT (II) ION
2KMT1Ligand/Ion4-(METHYLSULFANYL)-2-OXOBUTANOIC ACID

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:88 , HIS A:90 , GLU A:94 , HIS A:133 , HOH A:332 , HOH A:338binding site for residue CO A 201
2AC2SOFTWAREILE A:69 , PHE A:84 , ARG A:96 , PHE A:135 , HOH A:332 , HOH A:338 , HOH A:420binding site for residue KMT A 202

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5I8Y)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Gln A:21 -Pro A:22
2Arg A:160 -Pro A:161

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5I8Y)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5I8Y)

(-) Exons   (0, 0)

(no "Exon" information available for 5I8Y)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:179
                                                                                                                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee....................hhhhhhhh..eeee.hhhhh..hhhhhhhhhhhh..eeeeeee......hhhhhhhhhhh.ee....eeeeeeeeeeeeeee.....eeeeeee..eeeee.....eeeee.....eeeeeee........ee.....hhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5i8y A   1 MVQAWYMDESTADPRKPHRAQPDRPVSLEQLRTLGVLYWKLDADKYENDPELEKIRKMRNYSWMDIITICKDTLPNYEEKIKMFFEEHLHLDEEIRYILEGSGYFDVRDKEDKWIRISMEKGDMITLPAGIYHRFTLDEKNYVKAMRLFVGEPVWTPYNRPADHFDARVQYMSFLEGTA 179
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5I8Y)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5I8Y)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5I8Y)

(-) Gene Ontology  (14, 14)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MTND_MOUSE | Q99JT9: 1vr3 5i8s 5i8t 5i91 5i93

(-) Related Entries Specified in the PDB File

5i8s 5i91 5i93